Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01004 ATGAACTGCTTTGCTTGCGGTCCGTCCCATAGGGGTATCAATAGGAAGTCCTTGAAGAAAATCATTGATGAATCCCCTGACACAAAAACTCTAGCCTCATTTGCCAACATCCGCTACAGAAAATTTaacagaaagagaaagcaCCTGGTACATGATACAGCAAAgcttggaaaaggaaaaactagTGCTAAGATCTTCAGTTACCGCGAGCTACGCACTGCAACTCAAAATTTCCACCCAGAAAACCTGATTGGTGAAGGTGGCTTTGGGAGAGTATACAAAGGATACCTTAAAAACACTAACCAAGTTGTTGCTGTGAAGCAACTTGACCGTAATGGGTTCCAAGGAAACAAAGAATTTCTTGTGGaggttttgattttgagtCTCTTGAGGCACCCTAACCTTGTCAATTTAGTAGGGTATTGTGTTGAAGGGGATCAAAGGATTTTGGTGTATGAATACATGCCGAATGGTTCATTGGAAGATCACCTCCTTGAACAAGAGGAGGGCAGAAAATCTTTGGATTGGAGTACTAGGATGAAAATAGCAGAAGGTACAGCAAAAGGACTTCAATATCTGCATGAAGTAGCAAATCCACGAGTTATATACCGTGATTTGAAAGCATCAAACATACTTCTGGACGAGCATTTCAATCCAAAACTATCCGATTTCGGACTTGCAAAACTTGGACCAACTGGGGATAAAACTCATATTTCCACCAGTGTGATGGGTACCTTTGGCTATTGTGCTCCTGAGTATGCACAAACAGGGAAACTGACAACAAAATcagatgtttatagttttggcGTATTGTTTTTGGAGATAATCACAGGAAGAAGAGTGATTGATACTTCAAGACCCTCTGAAGAACAAAATTTGATCATCTGGGCACAACCACTATTCCAAGATATAAGCAGATTTGCATTGTTGGCTGATCCATTGTTGGAAAGGAATTACCCTATAAATGGTCTATACCAAGCACTAGCAATTGCTGCAATGTGTCTCCAAGAAGAAGCTTCTAGACCTCTGATCAGCCATGTGGCAACAGCTATTGGTTTTTTAGCAATGCAGGgggatgaagatgaagaaaacagcactgaggaagaagatgaagagaaggaGGAgggtgaagaagaagaagatgacgaTGATGAGGGAGGAAAAGGAGGAGGTAGTAATGGAGACAAGGAATCAGATAGAGtagatgaagagaaaaaaatcataggGAATGAAAAAGCTAACTGTATATG 1250 0.3568 MNCFACGPSHRGINRKSLKKIIDESPDTKTLASFANIRYRKFNRKRKHLVHDTAKLGKGKTSAKIFSYRELRTATQNFHPENLIGEGGFGRVYKGYLKNTNQVVAVKQLDRNGFQGNKEFLVEVLILSLLRHPNLVNLVGYCVEGDQRILVYEYMPNGSLEDHLLEQEEGRKSLDWSTRMKIAEGTAKGLQYLHEVANPRVIYRDLKASNILLDEHFNPKLSDFGLAKLGPTGDKTHISTSVMGTFGYCAPEYAQTGKLTTKSDVYSFGVLFLEIITGRRVIDTSRPSEEQNLIIWAQPLFQDISRFALLADPLLERNYPINGLYQALAIAAMCLQEEASRPLISHVATAIGFLAMQGDEDEENSTEEEDEEKEEGEEEEDDDDEGGKGGGSNGDKESDRVDEEKKIIGNEKANCI 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01004 416 Pfam Protein kinase domain 79 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01004 416 SMART serkin_6 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01004 416 Gene3D Transferase(Phosphotransferase) domain 1 155 381 - -
Bva12g01004 416 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL23-RELATED 18 373 - -
Bva12g01004 416 MobiDBLite consensus disorder prediction 360 386 - -
Bva12g01004 416 CDD STKc_IRAK 84 348 - -
Bva12g01004 416 Gene3D Phosphorylase Kinase; domain 1 38 154 - -
Bva12g01004 416 MobiDBLite consensus disorder prediction 387 410 - -
Bva12g01004 416 MobiDBLite consensus disorder prediction 356 416 - -
Bva12g01004 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Bva12g01004 416 ProSiteProfiles Protein kinase domain profile. 78 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g01004 416 SUPERFAMILY Protein kinase-like (PK-like) 64 342 IPR011009 -
Bva12g01004 416 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Bva12g01004 416 PANTHER OS07G0668900 PROTEIN 18 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01004 Bva-Chr12 10384965 10387623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01004 62 359 Glycoside Hydrolase AT3G07070 69.231 1.32e-151 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Bva12g01004 Pkinase 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01004 - - cam:101510927 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g01004 12 10384965 10387623 Bva12g02769 12 20100121 20102829 BWGD