Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g01001 ATGGCTTTCATATTCGAACCTCCCAGCGACGAAGAGCTTGCATACTCTGAAACAGAAAGCGAAGAGCAGGAAGAAAGTTCAGAAGACgaacaacaagaagaaagcgGCGAAGAggatggagaagaagaagaaaaggaaagagcagcgccaaaatcaaaaaagaagaaaactcagTCTCCATGGGACTTTGGTAAGTACACTGAAACAGTCGCAGAGGAACATGCCCGCAGAAGCACAACCTCGGTTGATGACAAAATCTCCAAAGCTCTGAAAGAACGTCCTGCTCCACTTGAACAAACCACAGCTGATGACGGTGATAGCTCAGAGTCGGAACCCGACAAACAAGAAGATTATAGACCAGAAGATGAAGATAATGGAGACAGTCATGTTGGTGAGAGCAAATCTTTCTTTGCCCCATCTGATGGAGTCTCCTTCCATGCTGATTCGTTCATGAAGCTTAACTTATCACGTCCTTTGCTTCGGGCTTGTGAGGCCTTGGGATACAGTAAACCAACTCCCATCCAGGCAGCATGTATACCATTGGCATTAACCGGTCGTGATATATGTGGAAGTGCCATTACTGGGTCTGGGAAGACTGCTGCATTTGCCCTGCCTACTTTAGAGAGATTATTGTACCGTCCAAAACGCATGCAGGCAATCAGGGTTCTCATTCTTACTCCAACCAGAGAATTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCACAGTTTACTGATATAAGGTGTTGTCTGGTTGTTGGGGGTTTATCAACGAAGGTGCAAGAGGCAGCCTTGAGATCTATGCCAGATATTGTTGTCGCCACTCCAGGACGCATGATAGATCATTTACGCAATTCTCTGTCTGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCTGATCGTCTCTTAGAGCTTGGCTTTAGTGCTGAAATTGATGAACTTGTTAGCTTGTGTCCCAAAAGAAGGCAGACCATGCTATTTTCAGCTACAATGACTGAGGAGGTTGATGAACTTATTAAACTTTCATTGACAAAGCCTGTTCGTCTATCTGCTGACCCATCTACAAAACGGCCTGCAACTTTAACTGAGGAagtGGTTAGAATACGAAGAATGCGTGAAGCAAATCAGGAAGCTGTACTTCTTGCTTTGTGCTCCAAGACCTTTACTTCTAAAGTGATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTAAAGATTATATTTGGATTAGCTGGCTTGAAGGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGCCTTGAAGCTTTGGAACAGTTTAGGCAGCAGCAAGTTGATTTTTTGATTGCAACTGACGTGGCTGCTCGCgGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGGGAACTTACCAGTTATGTTCATCGAGTGGGTCGCACTGCAAGAGCTGGTAGGGAAGGATATGCTGTCACGTTTGTGACTGATAACGACAGATCACTTTTAAAAGCCATTGCAAAGAGAGCTGGTTCAAAGCTGAAGAGCCGCATTGTTGCAGAGCAATCTATAATAAAGTGGTCGGGTATAATTGAGCAAATGGAGGATCAAATTGATGCAATTCTTCAAGAAGAGAGGGAAGAAATAGCCCTGAGAAAAGCTGAAATGGAGGCAACAAAGGCAGAAAACATGATTGCACACAAGGAAGAGATTTATTCTCGCCCTAAAAGAACATGGTTTCAGacggagaaggagaagaagctTGCAGCAAAAGCAGCAAAGGTGTCTATGGACAAGACGAATTCTGGGAAGGAGTTAATTAGTGCACAAGAAGCTGAAGACctaaaaatgaaggaaaagaggAAACGAGAGCGAGAAAAAAATATGCCAAGGAAGAAGCGTAGAAAACTGGAAGCAGCTAGAGAGATGCTGGAGGATGAAGGGCCCACAGACAAGGCTGAGGCTAAtgggaaaaataagaaagaaaaggctGGAATGTCACTTGTTGATCTAGCATACCGGCGGGCAAAAGCAGCCAAGGCTGTGAACAAGGCAGCAGATGCTGGCAAGATTTTGATCAAGGGTAAAAGTAAATCCAAACGTCCTCCCAACAAGTCTCCTTCAAGGACAAAGGAGATGCAGGATCTATTCCAGAATGACATGAGTgagaaaaaggcaaaaagaaaaggttttggAGCAGGAAAGAAATCCAAGAGTACATTTAAAAGCAAGTCAAGGTACAAGCGCAAGTA 2258 0.411 MAFIFEPPSDEELAYSETESEEQEESSEDEQQEESGEEDGEEEEKERAAPKSKKKKTQSPWDFGKYTETVAEEHARRSTTSVDDKISKALKERPAPLEQTTADDGDSSESEPDKQEDYRPEDEDNGDSHVGESKSFFAPSDGVSFHADSFMKLNLSRPLLRACEALGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLYRPKRMQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSLSVDLDDLAVLILDEADRLLELGFSAEIDELVSLCPKRRQTMLFSATMTEEVDELIKLSLTKPVRLSADPSTKRPATLTEEVVRIRRMREANQEAVLLALCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRQQQVDFLIATDVAARGLDIIGVQTVINFACPRELTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIIKWSGIIEQMEDQIDAILQEEREEIALRKAEMEATKAENMIAHKEEIYSRPKRTWFQTEKEKKLAAKAAKVSMDKTNSGKELISAQEAEDLKMKEKRKREREKNMPRKKRRKLEAAREMLEDEGPTDKAEANGKNKKEKAGMSLVDLAYRRAKAAKAVNKAADAGKILIKGKSKSKRPPNKSPSRTKEMQDLFQNDMSEKKAKRKGFGAGKKSKSTFKSKSRYKRK 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g01001 752 MobiDBLite consensus disorder prediction 12 43 - -
Bva12g01001 752 MobiDBLite consensus disorder prediction 731 752 - -
Bva12g01001 752 MobiDBLite consensus disorder prediction 612 626 - -
Bva12g01001 752 PANTHER BNAA01G17110D PROTEIN 68 716 - -
Bva12g01001 752 SMART ultradead3 167 368 IPR014001 -
Bva12g01001 752 Gene3D - 113 355 IPR027417 -
Bva12g01001 752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 179 353 IPR014001 -
Bva12g01001 752 Pfam Helicase conserved C-terminal domain 384 488 IPR001650 -
Bva12g01001 752 Gene3D - 365 613 IPR027417 -
Bva12g01001 752 MobiDBLite consensus disorder prediction 112 130 - -
Bva12g01001 752 MobiDBLite consensus disorder prediction 612 752 - -
Bva12g01001 752 MobiDBLite consensus disorder prediction 1 135 - -
Bva12g01001 752 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 299 307 IPR000629 -
Bva12g01001 752 MobiDBLite consensus disorder prediction 633 670 - -
Bva12g01001 752 MobiDBLite consensus disorder prediction 44 92 - -
Bva12g01001 752 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 148 176 IPR014014 GO:0003724
Bva12g01001 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 508 IPR027417 -
Bva12g01001 752 Coils Coil 533 573 - -
Bva12g01001 752 SMART helicmild6 403 488 IPR001650 -
Bva12g01001 752 CDD SF2_C_DEAD 365 497 - -
Bva12g01001 752 PANTHER RNA HELICASE 68 716 - -
Bva12g01001 752 Coils Coil 611 631 - -
Bva12g01001 752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 527 IPR001650 -
Bva12g01001 752 CDD DEADc_DDX27 159 354 - -
Bva12g01001 752 Pfam DEAD/DEAH box helicase 172 342 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g01001 Bva-Chr12 10361136 10368018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g01001 104 505 Eukaryotic Initiation Factors Gene Family AT3G13920 33.498 2.01e-53 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g01001 K13181 - gmx:100791233 1035.4