LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g00983	ATGAAGCCCCATTTGGGATATTTCAAGCTGCTATCTTTGCTTCTCCTTGGTTCCActtcattgatttttctttctgaattCACTTCTGCAGCCAAAGCCAAGCTCAACAGTGAGGAAGTGAAGGCATTGAAAGAGGTAGGGAGGACGCTGGGGAAGAAAGATTGGGACTTTGGGGTGGATCCTTGCAGTGGAAAAGGGAATTGGAAAGTGCTTGATGAAAGGAAAGGCTTTGAGAGCACTGTAATCTGCACTTGCTCCTTCAACAACAATTCCTCTTGCCATGTTGTAAGCATATCACTGAAGTCTCAGAATCTGTCTGGTACTCTTCCACCAGAGTTTTCCAAGTTTAAGTACCTCACACAATTGGACCTTAGTCGTAATCTCATCAATGGTTCTTTTCCTCCCCAATGGGCTACCATGCACTTGCAGGGGCTCTCTGTCATGGGAAACAGATTATCAGGTCCCTTCCCAAGAGTTCTCACCAGCATCACAACCCTCACAAACGTGAGCATTGAAGGCAATCAATTTTCTGGTCCCATTCCAATGGAGATTGGGAAGTTGTACCGTCTGGAAAAACTcGTTCTGTCATCAAATGCCTTCGCAGGAGAACTGCCAGTGGCAttttccaagttgaccaagttgaCTGATTTGAGGTTAAGTGGCAATAAATTCTCTGGGAGAATACCTGATTTTATCAGCAGATGGGTATTGATTGAAAAACTGCACATGGAAGGTTGCTCACTTGAAGGTCCCATACCATCTAGCATATCTGCCTTGACAAAATTAAGCGATTTGAGAATAACTGACCTCAAAGGTAGAGTCTCCACTTTCCCACAATTAAGTAATATGGAATCCATGAAAACACTGATACTGCGGAAATGCTTGATTAAAGGAAAGATCCCAGGATATATTGGGGAAATGGAAAAACTGAAACTCTTAGACTTGAGTTTCAACAATTTGACTGGAGAGATACCTCATTCTTTTGATCATCTTAAACGTGTAGACTTCATATATCTTATTGGGAACAAGCTAGAAGGGACTATACCTGGTTGGGTccttgaaagaaacaaaaatgtTGACGTATCTGACAATAACTTCAGTTGGGAGAACTCAAGTCCGACTGAATGTCCACATGGGAGTGTAAATTTAGTGGAGAGCTACTCCTCATCTGCTAATAAAAAAAACCATGTTAATCCTTGCTTGAAGAGGAACTATCCGTGTGCCTCTAACCAATATCATTACTCCTTGCACATTAATTGCGGTGGTAGGGAAGCCAACATCGGTGGCACTACTTATGAAGCTGacagagaaaaaagagggGCTTCAATGTATTACATTGGCCCTGGCCGGAACTGGGCTTTCAGCAGCAGTGGGAACTTCTTGGACAATGACCTCGATTCTGATACTTACATCGTGACCAATACATCTAAACTTTCCAATGTCTCTGTCCTCAACTCACAGCTCTACACAGCAGCTCGTGTATCTCCCCTTTCTCTCACATACTATGGCCTCTGCCTGGGAAATGGAAACTACACTGTTAAGCTCCACTTTGCAGAAATCATGTACATAAGTGGTAGATCATTTTACAGTCTCGGGAAGCGTGTATTCGATGTCTACATCCAGGGGAGGTTGGTCCTGAAAGACTTCGATATAGAAAGAGAAGCCGGTGGTACTGGTAAGCCTATTGTGAAGACATTCAATGCTAGCGTCACGCGAAATTCTCTAAAGATTCAGTTTTACTGGGCTGGAAAGGGGACAACAGGCATTCCAACAAGAGGAATTTACGGACCTCTTATATCTGCCATTTCTGTAGATCCTAATTTTATTCCTCCATCAGTGGGTGGAAAGAAAGGTCATGTCAAACTAATTGCTGGTGTAGCAGCTGCTGTTGTAGCAGTTGTTCTTATGCTCCTAGGTGTCCTTAGGTGGAATGGCTGGTTGGGAGGCAAGGACTCCGTGTATAAAGAGCTTAGAGGTATAGATCTGCAGACAGGATTATTTACACTAAGACAAATCAAAGCAGCAACAGACAACTTCAACACTGCCAATAAAATTGGGGAAGGTGGCTTTGGTTCTGTTTACAAGGGTCTATTATCAGATGGCACAGTAATTGCAGTTAAGCAGCTCTCCTCGAAATCTAAGCAAGGAAACCGGAACCAGTTAATGATAATCTATGAGTATTTGGAAAATAATTGTCTATCTCGAGCTCTTTTCGGGAAGGATCCAGCTACCAGACTGAAATTGGACTGGCCAACCAGGAAGAAGATATGCATTGATATAGCTAGAGCTTTGGCTTACCTCCACGAAGAGTCCACAATAAAAATTGTGCATAGGGATATCAAGACAAGTAATGTGTTACTTGACAAGGATTTTAATGCTAAGGTTTCCGATTTTGGTTTGGCAAAACTTAATGAAGATGACAATACCCATATAAGCACTCGAATTGCAGGAACAATTGGTTATATGGCTCCGGAATATGCAATGCGTGGTTACTTAACCGATAAAGCAGATGTATATAGCTTCGGGGTAGTTGTCCTGGAAACTGTAAGTGGTAAGAGCAATACAAATTATAGGCCAAGTGAAGACTTTGTTTACCTTCTTGATTGGGCCTATGTTCTGCAAGAGAGAGGGAATCTGCTGGAGTTGGTTGATCCAAGTCTGGGTTCAGATTATTCATCTGAGGAGGCAATGATGATGCTAAATGTGGCTCTCTTGTGTACCAATGCATCCCCCACGCTTCGGCCAACCATGCCGCAAGCAGTGAGCATGCTCGAAGGTCGAACCGACATCCAGGATATCCTTTCGGATCCGGGATATTCAGCCAATAGTTCCAAATATAAGGCCATAAGAAATCACTTCTGGCAGAATCCAAGCACAACAACACAGAGCATGTCATTGCATAGTTTGCATACTGATTCCTCTAATTCATACCTTGCAACTGTTAGCACAGAAGGGTCAGACAAAGAcaagtg	2972	0.4186	MKPHLGYFKLLSLLLLGSTSLIFLSEFTSAAKAKLNSEEVKALKEVGRTLGKKDWDFGVDPCSGKGNWKVLDERKGFESTVICTCSFNNNSSCHVVSISLKSQNLSGTLPPEFSKFKYLTQLDLSRNLINGSFPPQWATMHLQGLSVMGNRLSGPFPRVLTSITTLTNVSIEGNQFSGPIPMEIGKLYRLEKLVLSSNAFAGELPVAFSKLTKLTDLRLSGNKFSGRIPDFISRWVLIEKLHMEGCSLEGPIPSSISALTKLSDLRITDLKGRVSTFPQLSNMESMKTLILRKCLIKGKIPGYIGEMEKLKLLDLSFNNLTGEIPHSFDHLKRVDFIYLIGNKLEGTIPGWVLERNKNVDVSDNNFSWENSSPTECPHGSVNLVESYSSSANKKNHVNPCLKRNYPCASNQYHYSLHINCGGREANIGGTTYEADREKRGASMYYIGPGRNWAFSSSGNFLDNDLDSDTYIVTNTSKLSNVSVLNSQLYTAARVSPLSLTYYGLCLGNGNYTVKLHFAEIMYISGRSFYSLGKRVFDVYIQGRLVLKDFDIEREAGGTGKPIVKTFNASVTRNSLKIQFYWAGKGTTGIPTRGIYGPLISAISVDPNFIPPSVGGKKGHVKLIAGVAAAVVAVVLMLLGVLRWNGWLGGKDSVYKELRGIDLQTGLFTLRQIKAATDNFNTANKIGEGGFGSVYKGLLSDGTVIAVKQLSSKSKQGNRNQLMIIYEYLENNCLSRALFGKDPATRLKLDWPTRKKICIDIARALAYLHEESTIKIVHRDIKTSNVLLDKDFNAKVSDFGLAKLNEDDNTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVVLETVSGKSNTNYRPSEDFVYLLDWAYVLQERGNLLELVDPSLGSDYSSEEAMMMLNVALLCTNASPTLRPTMPQAVSMLEGRTDIQDILSDPGYSANSSKYKAIRNHFWQNPSTTTQSMSLHSLHTDSSNSYLATVSTEGSDKDK	990

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g00983	990	PANTHER	LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED	719	965	-	-
	Bva12g00983	990	PANTHER	LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE-RELATED	71	718	-	-
	Bva12g00983	990	Gene3D	Phosphorylase Kinase; domain 1	655	731	-	-
	Bva12g00983	990	Gene3D	Ribonuclease Inhibitor	237	409	IPR032675	-
	Bva12g00983	990	ProSitePatterns	Protein kinases ATP-binding region signature.	685	707	IPR017441	GO:0005524
	Bva12g00983	990	SUPERFAMILY	Protein kinase-like (PK-like)	663	952	IPR011009	-
	Bva12g00983	990	Gene3D	Ribonuclease Inhibitor	41	162	IPR032675	-
	Bva12g00983	990	Gene3D	Ribonuclease Inhibitor	163	236	IPR032675	-
	Bva12g00983	990	Pfam	Malectin domain	415	602	IPR021720	-
	Bva12g00983	990	Gene3D	-	411	606	-	-
	Bva12g00983	990	SUPERFAMILY	L domain-like	90	349	-	-
	Bva12g00983	990	Pfam	Leucine rich repeat	285	344	IPR001611	GO:0005515
	Bva12g00983	990	Pfam	Protein tyrosine and serine/threonine kinase	718	919	IPR001245	GO:0004672\|GO:0006468
	Bva12g00983	990	Gene3D	Transferase(Phosphotransferase) domain 1	732	937	-	-
	Bva12g00983	990	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	719	965	-	-
	Bva12g00983	990	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	71	718	-	-
	Bva12g00983	990	ProSiteProfiles	Protein kinase domain profile.	679	934	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva12g00983	990	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	775	787	IPR008271	GO:0004672\|GO:0006468
	Bva12g00983	990	SMART	serkin_6	679	924	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g00983	Bva-Chr12	10275141	10283226	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g00983	217	976	Receptor kinase-like Gene Family	AT1G07650	62.374	0.0	959

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bva12g00983		PK_Tyr_Ser-Thr	1.6e-28	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g00983	-		-	gmx:100784864	1472.22