Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00932 ATGGCTTTCTTTAGAAATTATTCAAATGAAACAGTTTCACATAATGTCTTAGAAGAAAAAGGCCATGGACTGAATGCAGATAGAATCCACAGATCACTAGGTAATGAATGTGATGATGAAACTTATAGTGAGAAAGATATTGATATGAATATGGATGCCCAGTATCAGAGCGACGATGAACCTGATAGTGCCAATAGACTGCCAAATGAGGCAACAGTTGATGATGGAGTTGGTATGAGAGAATCAAACTTGCATGATAATGGAAGGAAAACAGCAATGGTTGGAAGGTGGGGTTCAACTTTCTGGAAGGACTGCCAGCCTATGTGTCCTCAGAACGGATCAGAATCTGGTCAGGAATCTAAAAGTGGATCAGACTATAGAAATGCAGATGGATCTGAAGATAATTCATCTGATGGAAGACGGGGAAGGTTAGATttagaagatgatgatgaacaAAAGGAAGCTGGAAAAGGTCCAAGAAGCCATTCTGATGTTCCTGCTGAGGAGATGCTATCTGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCGATGCATTATAGGGGCATTCAACAACCCATTGGATCAAATTCTTGGCCACAACAGATGTCTAGAGGTGTCAATAGCCGTGGACGGAGGAATTCTAGGATTTCAGACGATGATGGTGATTATGATAATGACGATGGTGATGCTGATTATGAAGAAGAGGATGAGGCAGATgAAGATGACCCTGAAGATGCAGACTTTGAGCCAACCACAAGCAGTCGTACTGCAAACAAGGATGAAGATTGGAATGGTGGAGATTCAGAAGATGATGAAAGTGAAGACAATGTAGAAGTCTCAGATGAAGATGATTGTTACTATGGAAAGAAACCCAAGGGGAGGCAATGTGGCAGGGTTGCTCAAAGTGTAAAATCTTCTAGAGAACGCTCCAGTCGACAAAGAAGAGTTAAATCATCTTTTGAAGAGGATGAGTCAACAGCAGAGGATTTTGACAGTGAAAGTGATGAGGATTTTAAAAGCATAAAGAAGAGAGGTGTCCAGGTTCGAAAGAATAATGGGCGATCTTCTGCAGCAACAAGTTTTTCTGGGCGAAACAATGAGGTTCGCTCTTCTGGTAGGACTGTCAGGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGTTGatgaaggaaagaagaagaagtccCAAAAGGAGGAAATTGAAGAGGAGGATGGTGACTCCATTGAAAAGGTGCTTTGGTATCAGCCCAAGGGCATGGCTGAAGAGGCTCAAAGGAATGATAGATCGATAGAGCCTGTTCTGTTGAGCCACTTATTTGATTCTGAACCTGATTGGAATGAGATGGAGTTCTTGATTAAATGGAAAGGCCAGTCACATTTGCACTGTCAATGGAAATCATTTGCTGAGCTGCAAAATCTCAGTGGATTTAAGAAGGTTTTAAACTATACAAAGAAAGTGACAGAGGAAATCAGGTATAGGATGTCAATCTCCAGAGAAGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATTTAATCAAGCAAAACAGTCAGGTGGAGAGGGTTATTGCAGATAGAATCAGCAAAGATAACTCTGGCAATGTCATTCCTGAATATCTGGTCAAATGGCAGGGACTATCCTATGCAGAAGCAACATGGGAGAAGGACGTTGATATCGCTTTTGCTCAACATGCTATTGATGAGTACAAgGCTCGTGAAGCTGCTATGTCAGTTCAAGGAAAGATGGTAGATCCCCAGCGCAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGATGAACAGCCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGgtttgaattttcttgttaACAGTTGGAGAAATGATACAAATGTCATCTTAGCTGATGAAATGGGTCTTGGAAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGTATGCCCAGCAAATCCATGGTCCTTTTCTTGTGGTTGTCCCATTGTCCACTTTGTCAAACTGGGCCAAAGAATTCCGGAAGTGGCTTCCTgatgtaaatattattgtatatgTTGGTACACGTGCAAGTCGAGAGGTTTGCCAACAGCATGAATTTTGTAATGACAAAAAGGTTGCCAGgcctataaaatttaatgcatTGTTGACTACATATGAAGTTGTTCTGAAGGATAAGGCTGTTCTCTCCAAAATCAAATGGAATTATCTTATGGTTGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAGTTGTACACAACACTCTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACCCCTCTACAGAATAGTGTTGAGGAGCTATGGGCTTTGCTTCACTTCCTTGATCCTGATAAGTTCAAGAGCAAAGATGACTTCGTTCAAAACTATAAGAATCTAAGCtcatttaatgaaaatgagCTTGCTGATCTTCATATGGAATTGAGGCCTCACATACTCCGAAGAGTTATCAAAGATGTGGAGAAATCTTTGCCCCCCAAAATTGAGCGTATTCTGAGGGTTGAAATGTCTCCTCTTCAGAAACAGTACTATAAGTGGATCTTAGAACGCAACTTCCATGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTTAATATTGTGGTAGAATTAAAGAAGTGCTGCAATCACCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCTGTAAGCAGTGACAACGGTAAACTGGAGAGAATTGTCTTTAGCAGTGGGAAGCTTGTCATACTTGATAAGCTGCTGGTTAGATTGCATGAGACTAAGCACCGTGTTCTGATTTTTTCTCAGATGGTTAGGATGTTGGATATACTGGCAGACTATATGTCACTTAGAGGGTTTCGATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTGCGGCAGCAGGCTATGGACCATTTTAATGCGCCTGGTAGTGATGATTTCTGCTTCCTGCTTTCAACACGAGCAGGAGGTCTTGGTATCAACCTTGCCACAGCGGACActgttataatatttgattcaGACTGGAATCCCCAGAACGACCTACAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTGAACATTTATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTAGAACGAGCTAAGAAGAAAATGGTTCTTGATCATTTGgtgattcaaaaattaaacgCAGAGGGTAGGctggagaagaaagaagccaAAAAGGGAAGTTATTTTGACAAAAATGAGCTATCAGCAATCCTAAGATTTGGAGCGGAGGAGCTTTTTAAGGAGGAGAGAAATGatgaagaaagcaagaaacGGCTCTTAAATATGGATATAGATGAGATACTTGAAAGAGCAGAGAAGGTTGAGGAGAAGGAAACCGAGGGAGAACAAGCAAATGAGTTACTGAGTGCCTTTAAGGTTGCTAATTTCACTAATGGTGAGGATGATGGAAGTTTCTGGAGTCGATGGATAAAACCTGAAGCAGTAGCCCAAGCTGAAgAAGCCCTTGCTCCTCGTGCTGCGAGgaatattaaaagttatgCAGAGGCTAATCAATCTGGAAGAGCAGAGGTTAATCCATCTGGAAGAAgcagtaaaaggaaaaagaaagaacctgAACCCCCAGAGAGAATTCAGAAACGCCGGAAAACAGAGTATTCAGTTCCTGCAGTACCTATGATTGAGGGGGCGTCTGCTCAAGTGAGAAGTTGGTCATATGGGAATTTGTCCAAAAGAGATGCACTGCGATTTTCTCGTGCAGTTATGAAATTTGGAAACGAGAGCCAAATTGACTCTATAGCTGTTGAGGTTGGTGGAGCAGTTGGAGCAGCTGATTCTGAAGCACAGAGTGAACTCTTCAATGCCTTAATTAATGGCTGTAGAGAAGCAGTGGAATTTGGAAGTATGGATCCAAAGGGTCCTTTGTTGGATTTCTTTGGTGTCCCAGTAAAGGCAAATGATCTACTCAATCGTGTTCAAGAACTTCAACTCGTAGCAAAACGCATTAATCGATATGAGGATCCCATTGGACAATTCCGTGTGTTAGCATATCTCAAACCTGCCACCTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGACTGCTTCTTGGAATATACTACCATGGGTTTGGCAATTGGGAAAAGATAAGATTAGATGAAAGGCTTGGCCTTACGAAGAAGATTGCTCCGGTAGAACTTCAACACCACGAAACTTTCTTACCACGAGCTCCGAATTTGAGAGATCGTGCTAATTCCCTCCTTGAACAAGAAGTTGCTGTTCTTGGGGGCAAAAGCCTCAATAGCAAAGTTGGACGTAAGGCttccaagaaagagagagaacagCTTATGAACATGTCATTGTCTCGTGGGCAGGAGAAGAAGGGAAAAGTAGGTTCTCCTAAAGTTAATGCCCGCATGAGAAAGGATAGACCTCAGAAACACCAGAGAGTTGAACCTATGGTGAAAGAAGAAGGTGAAATATCTGACAATGAGGAAGTATATGAGCATTTCAAGGAGGTTAAATGGATGGAATGGTGCCAAGATGTGATGCttgaagaaatgaaaacattGAAACGTCTTCAGAGGCTGCAAACAATCAGCGCCAATCTTCCAAAGGAAAAGgtgCTTTCAAAAATCCGCAACTATTTACAGCTTCTTGGACGGAGGATAGATCAAATCGTGTTAAAACATCATTCTAAAGAGCCCTATAAGCGAGATAGGATGACTATGCGATTATGGAACTATGTCTCTACCTTTTCCCATCTCTCCGGGGAGAGgctttgtcaaatttattcCAAACTAAGACAAGAACAGGAACATGAGGTAGGGGTTGGCCCCTCTCATGTCAATGGGTCATTATCTGGTCCATCTGGCAGATATGGTAACCCTAATGCTTTCCCTCGCCATACAGAGGGGCAGAGAGGATACAAAAATGTTACCACCACGCAAATGCCAGAACCAGTGAATCATACAGGAAAATCTGAGGCATGGAAACGAAGAAGGGCTGAAAGCGATAGTAATTTCCAAGGTCCCCCTCTACCTCAAAGAACTATGAGCAAAGGAGTCCGAATATCCGATCTGAACTCACTGGGGATTCTTGGGGCTGGACCATCTGACAGACGTTTTGTTAGTGAAAAACCTTATCGGACGCGACCTGGTGGGTTTCCTACTAGACAAGGTTTCTCTTCTGATACCAAGTA 5282 0.4029 MAFFRNYSNETVSHNVLEEKGHGLNADRIHRSLGNECDDETYSEKDIDMNMDAQYQSDDEPDSANRLPNEATVDDGVGMRESNLHDNGRKTAMVGRWGSTFWKDCQPMCPQNGSESGQESKSGSDYRNADGSEDNSSDGRRGRLDLEDDDEQKEAGKGPRSHSDVPAEEMLSDEYYEQDGEEQSDSMHYRGIQQPIGSNSWPQQMSRGVNSRGRRNSRISDDDGDYDNDDGDADYEEEDEADEDDPEDADFEPTTSSRTANKDEDWNGGDSEDDESEDNVEVSDEDDCYYGKKPKGRQCGRVAQSVKSSRERSSRQRRVKSSFEEDESTAEDFDSESDEDFKSIKKRGVQVRKNNGRSSAATSFSGRNNEVRSSGRTVRKVSYVESEESEEVDEGKKKKSQKEEIEEEDGDSIEKVLWYQPKGMAEEAQRNDRSIEPVLLSHLFDSEPDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVTEEIRYRMSISREEIEVNDVSKEMDLDLIKQNSQVERVIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDVDIAFAQHAIDEYKAREAAMSVQGKMVDPQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQYAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDVNIIVYVGTRASREVCQQHEFCNDKKVARPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELADLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVSSDNGKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILADYMSLRGFRFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLNMDIDEILERAEKVEEKETEGEQANELLSAFKVANFTNGEDDGSFWSRWIKPEAVAQAEEALAPRAARNIKSYAEANQSGRAEVNPSGRSSKRKKKEPEPPERIQKRRKTEYSVPAVPMIEGASAQVRSWSYGNLSKRDALRFSRAVMKFGNESQIDSIAVEVGGAVGAADSEAQSELFNALINGCREAVEFGSMDPKGPLLDFFGVPVKANDLLNRVQELQLVAKRINRYEDPIGQFRVLAYLKPATWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANSLLEQEVAVLGGKSLNSKVGRKASKKEREQLMNMSLSRGQEKKGKVGSPKVNARMRKDRPQKHQRVEPMVKEEGEISDNEEVYEHFKEVKWMEWCQDVMLEEMKTLKRLQRLQTISANLPKEKVLSKIRNYLQLLGRRIDQIVLKHHSKEPYKRDRMTMRLWNYVSTFSHLSGERLCQIYSKLRQEQEHEVGVGPSHVNGSLSGPSGRYGNPNAFPRHTEGQRGYKNVTTTQMPEPVNHTGKSEAWKRRRAESDSNFQGPPLPQRTMSKGVRISDLNSLGILGAGPSDRRFVSEKPYRTRPGGFPTRQGFSSDTK 1760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00932 1760 Pfam SNF2-related domain 635 904 IPR000330 GO:0005524|GO:0140658
Bva12g00932 1760 SUPERFAMILY Chromo domain-like 408 491 IPR016197 -
Bva12g00932 1760 CDD CD1_tandem 409 489 - -
Bva12g00932 1760 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1671 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 267 284 - -
Bva12g00932 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1121 IPR027417 -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 1668 1683 - -
Bva12g00932 1760 SMART ultradead3 612 811 IPR014001 -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 1481 1513 - -
Bva12g00932 1760 Pfam Domain of unknown function (DUF4208) 1535 1627 IPR025260 -
Bva12g00932 1760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 936 1087 IPR001650 -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 353 380 - -
Bva12g00932 1760 SUPERFAMILY Chromo domain-like 503 579 IPR016197 -
Bva12g00932 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 524 588 IPR000953 -
Bva12g00932 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 837 IPR027417 -
Bva12g00932 1760 SMART chromo_7 432 492 IPR000953 -
Bva12g00932 1760 SMART chromo_7 522 581 IPR000953 -
Bva12g00932 1760 Gene3D - 1350 1455 - -
Bva12g00932 1760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 628 800 IPR014001 -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 54 90 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 108 409 - -
Bva12g00932 1760 Gene3D - 397 524 - -
Bva12g00932 1760 CDD SF2_C_SNF 923 1057 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 308 326 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 223 250 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 381 406 - -
Bva12g00932 1760 SMART DUF4208_2 1522 1628 IPR025260 -
Bva12g00932 1760 Coils Coil 1129 1156 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 187 213 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 126 169 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 108 125 - -
Bva12g00932 1760 Gene3D - 526 578 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 1219 1242 - -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 1206 1243 - -
Bva12g00932 1760 Gene3D - 607 846 IPR038718 -
Bva12g00932 1760 Pfam Chromo (CHRromatin Organisation MOdifier) domain 525 579 IPR023780 -
Bva12g00932 1760 SMART helicmild6 962 1046 IPR001650 -
Bva12g00932 1760 CDD CD2_tandem 522 578 - -
Bva12g00932 1760 Coils Coil 1076 1096 - -
Bva12g00932 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 411 490 IPR000953 -
Bva12g00932 1760 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1671 - -
Bva12g00932 1760 Pfam Helicase conserved C-terminal domain 933 1046 IPR001650 -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 1488 1513 - -
Bva12g00932 1760 Gene3D - 847 1077 IPR027417 -
Bva12g00932 1760 MobiDBLite consensus disorder prediction 1633 1760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00932 Bva-Chr12 9995755 10012417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00932 638 1073 RAD5 or RAD16-like Gene Family AT1G02670 25.545 6.70e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva12g00932 SNF2_N 2.8e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00932 K11367 - gmx:100808039 2730.28