Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00930 ATGATGAGTGTGATACTGAGAAGGTATTCTTCCATAGCTTCAAGGCGTACTCTCGCTGCTTTGACTGCTGCGGAGTCGGTTCTGCACCACCAGCTCAGCTCCTCCGCCGCCGCATCGGTTTCCGGAAATGGTTCGGTTGGTAGTGAGATTGGGTCTTGTTCCAACTTTTTGGGGCCTAGTGGCGGCATAGCCAGGGCCTTTCACGCGAAATCTGGTCCGTTGAATTTCCGGTCGTCATTGGTTTCTCGGACCGGGTTTGCTGCGGCGGATTACTCCTATGAAGAAGGGAAAGGAGGTAGCGATGAAGGCCTTGAGATCGCAAAGCTTGGGATTGCTCAGGAAATCATTTCTGCTTTGGCTAAAAAAGGTATCACGAAGCTGTTCCCCATTCAGAGAGCTGTGCTGGAACCTGCCATGCAAGGACGTGATATGATAGGTCGAGCTAGGACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCCAAACATGGACGAGGAAGGAATCCTCTGGCTTTGGCTTTGGCTCCAACCAGAGAACTTGCACGGCAGGTTGAGAAAGAATTCCAGGAGTCAGCACCTAGCTTGGATACAATTTGTGTCTATGGGGGTACACCCATATCTCACCAAATGAGGCAGCTTGACTATGGTGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAACAGAGGTTCTCTAAATTTGAGTGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGCTTTCAGGAGGATGTTGAGAAAATCTTGGAGAGGTTGCCTCCAAAACGTCATACTCTGATGTTCTCTGCAACAATGCCATCTTGGATAAGGCAGCTCTCCCGCAAGTACTTAAATGATCCCGTAATCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTATTCTCGATTGAATCTGATATGCGCACAAAAGCAGGGATCATTGCGCCTCTTGTAACAGAACATGCGAAAGGTGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGACCGGTTATCATATGCCATGGAAAAAACCCTTAGATGTGAGGCCTTGCATGGTGATATTTCACAAAATCAGAGGGAACGAACTCTAGCTGGCTTCAGAAATGGTGAATTCAATGTCTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCAAATGTTGATCTTATAATACATTTTGATATACCCAATTCTTCAGAGATATTTGTTCATCGATCTGGAAGAACAGGTCGTGCTGGGAAGAAAGGAACTGCTATTCTCATTTATTCACAAGATCAACACAGGACTGTTAGGACTATTGAGCGGGATGTAGGTTGCAAATTTACTGAGCTCCCTAGAATTGCTGTCAAAAGTGGATCAGTTGACATGTTTGGTGGCGGCATGGATAGTGGTCGATTTGGCTCATTCGGAGGCATGAGGGACCGTCGACCTGGATTTGGCCGTTCTGGTGGCTTTGGTAGAAATTCTGGTGACATGGGAAGGTATGGTGGATCAAACCCTGGTGATTATGGTTCTTTTGATCGCCCAGGTCAATCAAGAGGTGGATTTGGCATGAACCGCCCTGGAAATACTGATGGAACTAGATTTAGTCGACCAGGTGGTTTTGGTAGTTCAGGCCGTTCTGGTGGTTTTGGTAATTCTGATCGTTCTGGCGGTTTTGGAGGTTTCGGTAATTCATATCGTTCTGGTGGTTTTGGCAACAGAAGTTCTGGCCAAAGCAGTGCCTTCGGTGATCATCCAAAGAGTAATGATCGGAACAATGGGGGAAGACCATTCTA 1868 0.4609 MMSVILRRYSSIASRRTLAALTAAESVLHHQLSSSAAASVSGNGSVGSEIGSCSNFLGPSGGIARAFHAKSGPLNFRSSLVSRTGFAAADYSYEEGKGGSDEGLEIAKLGIAQEIISALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRNPLALALAPTRELARQVEKEFQESAPSLDTICVYGGTPISHQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLSEVQFVVLDEADQMLQVGFQEDVEKILERLPPKRHTLMFSATMPSWIRQLSRKYLNDPVIIDLVGDSDQKLADGISLFSIESDMRTKAGIIAPLVTEHAKGGKCIVFTQTKRDADRLSYAMEKTLRCEALHGDISQNQRERTLAGFRNGEFNVLVATDVASRGLDIPNVDLIIHFDIPNSSEIFVHRSGRTGRAGKKGTAILIYSQDQHRTVRTIERDVGCKFTELPRIAVKSGSVDMFGGGMDSGRFGSFGGMRDRRPGFGRSGGFGRNSGDMGRYGGSNPGDYGSFDRPGQSRGGFGMNRPGNTDGTRFSRPGGFGSSGRSGGFGNSDRSGGFGGFGNSYRSGGFGNRSSGQSSAFGDHPKSNDRNNGGRPF 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00930 622 Gene3D - 324 483 IPR027417 -
Bva12g00930 622 SMART ultradead3 123 326 IPR014001 -
Bva12g00930 622 MobiDBLite consensus disorder prediction 498 622 - -
Bva12g00930 622 SMART helicmild6 363 443 IPR001650 -
Bva12g00930 622 MobiDBLite consensus disorder prediction 592 611 - -
Bva12g00930 622 CDD DEADc 115 310 - -
Bva12g00930 622 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 530 - -
Bva12g00930 622 CDD SF2_C_DEAD 345 452 - -
Bva12g00930 622 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 483 IPR001650 -
Bva12g00930 622 Pfam Helicase conserved C-terminal domain 339 443 IPR001650 -
Bva12g00930 622 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 54 530 - -
Bva12g00930 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 464 IPR027417 -
Bva12g00930 622 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 309 IPR014001 -
Bva12g00930 622 Pfam DEAD/DEAH box helicase 128 296 IPR011545 GO:0003676|GO:0005524
Bva12g00930 622 Gene3D - 105 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00930 Bva-Chr12 9978310 9982245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00930 109 475 Eukaryotic Initiation Factors Gene Family AT3G19760 32.800 5.40e-66 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00930 - - ahf:112702088 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00930 12 9978310 9982245 Bva12g02883 12 20750014 20753953 BWGD