Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00924 ATGAATAGTGGAGTTCCTGACTGGTATTTTGAGAATGATACCTGCATCACCAATCAAAAGGGGCCCATTGGGCCGGACCAAGAACTTGTAGAACTTTTATGGCGAAACGGGCAGGTAGTTATGCACAGCCAACCACAAGGTAAACCAGTGATGAATTCTATTGACTCAAGACAGTTTCAGAAAAATGATCAACCAACATCTAGAACTGGTGGATCGCATGGAAACTCAAGTAATTTGATTCAAGATGATGAGACAGTCTCGTGGATCCAATACACACTTGAGGATCCATTGAAACAAGAATTCTGTTCTAACTTTCTGACAGAGCTACCATCCTGTCAAACTCACTCTTATAAGCCAATGAAGCAATTCGAAGAAGGAAGGTTTGCCAAATGTGGTGCCATTAGCACACCCCATGTCAATGCAAGTTCACAACCTCCTAATACAAAACCTTCCGTTGTTCAGGAATTCTCAGGAAATCCCATGCCCGCTCCAAGATTTCATTTACCTGATTCATCTCAGAAAAACCTTGAATCAGGTGGATCacaaaaagttttcaatttttcccaCTTTTCAGCACCTCCTAAGGTTGTTTCTGCATCTTCTAATGCAAAATTTGGAGATAAAGGTGCTAATAATTTGTTGCCAAGTCAGACTAGCTTGGGCTCAGTGATGACAGTTGGGTCAAGTCACTGTGGCAGTAATCTAATCCCTCAAGACCCAGATGTAAGCTGGGCATCAAGCAATGGTGTTTGGACTACTGCTGTATCTGCTGAGCCTGAACCCTTCGGGGATGATGTGCACAGGCCCATTCCTAGGAGTGATAAAGGGAAATTAGAGACACTTGAACCAACAGTTACTTCATCTTCTGATGGTTCGGGCAGTAGTCTTAGAAGAACTGGTTCCCAGTCTACGAGGATCCATGgccagaaaaggaaagagataGATGCAGAAGAATCAGAGGAACAAAGTGAAGCCACAGAACTCAAATCAGCAGCTGGAAACAAATCATCTCAGCGGACAGGGTCATCCCGTAGGAATCGTGCAGCTGAAGTGCATAATCTCTCTGAAAGGAGACGAAGAGATAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGCAACAAGACAGACAAAGCATCAATGCTGGATGAGGCAATAGAATACTTGAAATCACTTCAGTTACAACTTCAGGTGATGTGGATGGGAACTGGCATGACACCGGTGATGTTCTCCGGCATTCAGCACTACATGTCACAGATGGGTATGGGAATGGCTCCATCTTCTTTTCCTCCTATTCACAATATGATGCATTTACCAAGAATGCCAGTTGATCAGTCCATACCTGTGGCTCAGACACCAAACCAAACTGTGATGTCCCAAAATCCAGTTTTGGGTGCCTTAAATTACCAAAATCAGATGCAAAATCCTACTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAGTGCCTCTCAGCCTATGAATGCATTCAGATATGGCCCCCAGGCTGTACAGCACAGTCAAGCAAGGATTCCGCCCATGAATAGTAATGGACCCCCGAGTGTAGCAGCTAATGCTGACGGTGCTGTAAGTGGCAAAATGGGTTA 1631 0.4323 MNSGVPDWYFENDTCITNQKGPIGPDQELVELLWRNGQVVMHSQPQGKPVMNSIDSRQFQKNDQPTSRTGGSHGNSSNLIQDDETVSWIQYTLEDPLKQEFCSNFLTELPSCQTHSYKPMKQFEEGRFAKCGAISTPHVNASSQPPNTKPSVVQEFSGNPMPAPRFHLPDSSQKNLESGGSQKVFNFSHFSAPPKVVSASSNAKFGDKGANNLLPSQTSLGSVMTVGSSHCGSNLIPQDPDVSWASSNGVWTTAVSAEPEPFGDDVHRPIPRSDKGKLETLEPTVTSSSDGSGSSLRRTGSQSTRIHGQKRKEIDAEESEEQSEATELKSAAGNKSSQRTGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGTGMTPVMFSGIQHYMSQMGMGMAPSSFPPIHNMMHLPRMPVDQSIPVAQTPNQTVMSQNPVLGALNYQNQMQNPTLSEQYARYMGYHLMQSASQPMNAFRYGPQAVQHSQARIPPMNSNGPPSVAANADGAVSGKMG 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00924 543 MobiDBLite consensus disorder prediction 510 543 - -
Bva12g00924 543 MobiDBLite consensus disorder prediction 138 155 - -
Bva12g00924 543 MobiDBLite consensus disorder prediction 280 303 - -
Bva12g00924 543 Gene3D - 342 403 IPR036638 GO:0046983
Bva12g00924 543 MobiDBLite consensus disorder prediction 58 81 - -
Bva12g00924 543 MobiDBLite consensus disorder prediction 256 362 - -
Bva12g00924 543 MobiDBLite consensus disorder prediction 261 279 - -
Bva12g00924 543 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Bva12g00924 543 MobiDBLite consensus disorder prediction 345 362 - -
Bva12g00924 543 PANTHER TRANSCRIPTION FACTOR PIF5 5 525 - -
Bva12g00924 543 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 525 IPR031066 -
Bva12g00924 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 410 IPR036638 GO:0046983
Bva12g00924 543 MobiDBLite consensus disorder prediction 138 164 - -
Bva12g00924 543 MobiDBLite consensus disorder prediction 326 344 - -
Bva12g00924 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Bva12g00924 543 MobiDBLite consensus disorder prediction 510 530 - -
Bva12g00924 543 SMART finulus 353 402 IPR011598 GO:0046983
Bva12g00924 543 CDD bHLH_AtPIF_like 347 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00924 Bva-Chr12 9934530 9939805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00924 8 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.815 1.37e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva12g00924 HLH 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00924 K16189 - gmx:100784531 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00924 12 9934530 9939805 Bva12g02871 12 20676992 20682437 BWGD