Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00909 ATGGTCATGGATAATGCAAATGAAGTATCATCATCCTTGAGTTTTGCATCGTCTAACTTATCAAATGGATCTAGCAATAATAACATGTCTGCCGCTGCTAGCGGCGAGCATGGAACAAACCTTGAGATTTTGAGTTTGAGTAAGCTCAGTGGAAGCCTTGAGAGGTTGTTGATTGATGCTGAATTTGACTATAGTGATGCTGAAATTGTTGTTGAGGATATTCCTGTCGGGGTTCATCGTTGTGTATTGGCGTCACGAAGCCAGTTTTTTCATGAGCTCTTTAAGAAAGGAAATCATGTTTTGGCGAAGGAAGGTAAGCCAAGGTATCTCATGTCAGAATTGGTGCCTCATGGGGTAGTTGGACAAGAAGCCTTCCTTGTGTTCTTGCATTACTTGTATACCGGAAAGCTTAAGGCATCACCACCAGAAGTATCAACATGTGTTGATGAAGCGTGTGCCCATGATGCATGCCGCCCTGCCATCAATTATGCTTTGGAACTAATGTATGCGTCTGCCACTTTTCAGATGAAAGAGCTTGTTTTACTTGTTCAGCGGCGACTCCTCAATTTTGTTGATAAGGTTCTTGTGGAAGATGTCATTCCAATTGTTATTGCTGCCTTCCATTGCCAACTAAACCAGCTTCTCTCTCACTGCACTCAGAGACTAGCAAGGTCTGATCTTGATAACATAACTTTGGAGAGAGAGCTCCCTCATGAAGTTGTGAGTGAAATCAAATCACTCCGAGTCAAACCTCTTCCAGAATTGACACCCAATGCTATGGAAGTGGAAGTGGAACCCAATGAAAAGAGTATCAGAAGAATCCTTAAGGCGTTGGACTCTGACGATGTTGAGTTGGTGAAGCTTCTTCTGGATGAATCTAAGGTCACTTTAGATGATGCTTATGCTCTCCACTATGCCTGTGCCTATTGTGATCCTAAGATTATTCAGGAGGTTCTTAGCCTATCTTTGGCTGATATAAACCGTAGGAATCCCCGTGGATATACGGTTCTTCATGTAGCTGCAAGACGGAAAGTTCCATCAATTTTAGTTGCATTGCTTAAAAGGTGTGCAGATGCATCAGAAACCACATTAGATGGACAAACTGCTGTTGCAATTTGTCGGAGGTTGACAAGGCCAAAAGATTATAATGAAAAAACGGAGCAGGGGATGGAATCAAACAAAGATCGTCTCTGCATTGATATCTTGGAGAGAGAGATGAGAAGAAATTCGATGTCTGTGAACATACCAGACTCATCACAGTTAATTTCTGATGATTTGCACATGAGACTGGATTACCTGGAAAATAGAGTTGCATTCGCTAGGCTGTTGTTTCCTGCTGAGGCTAGGGTAGCCATGGAGAATGCGGAGATATCCTCAACATCAATGTGCACAGGCGGGTCACCATTGAATGGCTCAAGTGGCAACCTAAGAGAGGTTGATCTAAATGAAACTCCTGCACTGAGAACCCGAAGACTCCAGGCAAGGTTAAATGCCCTTCTAAAAACAGTTGAGAATGGTAGACGGTTCTTTCCCCATTGCTCAGAGGTGATCGACAAGTTTCTCGAAGACGATATACCTGATGTTTTCTTCCTAGAGAAGGGCTCTTCAGACGAGCAGAGAATCAAGAAAACGCGCTTCATGGAACTTAAAGAAGATGTGCAGAAGGCATTTCGCAAGGACATGGCTGGAAATAATCATCAAGGGTTGGCATCCACTGTTTGTTCCTCATCGTCCTCCTCTCCTAGGGAAGGTCTAAGACAAAAAGCTAGGAAAAGGTA 1778 0.4331 MVMDNANEVSSSLSFASSNLSNGSSNNNMSAAASGEHGTNLEILSLSKLSGSLERLLIDAEFDYSDAEIVVEDIPVGVHRCVLASRSQFFHELFKKGNHVLAKEGKPRYLMSELVPHGVVGQEAFLVFLHYLYTGKLKASPPEVSTCVDEACAHDACRPAINYALELMYASATFQMKELVLLVQRRLLNFVDKVLVEDVIPIVIAAFHCQLNQLLSHCTQRLARSDLDNITLERELPHEVVSEIKSLRVKPLPELTPNAMEVEVEPNEKSIRRILKALDSDDVELVKLLLDESKVTLDDAYALHYACAYCDPKIIQEVLSLSLADINRRNPRGYTVLHVAARRKVPSILVALLKRCADASETTLDGQTAVAICRRLTRPKDYNEKTEQGMESNKDRLCIDILEREMRRNSMSVNIPDSSQLISDDLHMRLDYLENRVAFARLLFPAEARVAMENAEISSTSMCTGGSPLNGSSGNLREVDLNETPALRTRRLQARLNALLKTVENGRRFFPHCSEVIDKFLEDDIPDVFFLEKGSSDEQRIKKTRFMELKEDVQKAFRKDMAGNNHQGLASTVCSSSSSSPREGLRQKARKR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00909 592 CDD BTB_POZ_NPR_plant 54 178 - -
Bva12g00909 592 Gene3D Potassium Channel Kv1.1; Chain A 37 223 IPR011333 -
Bva12g00909 592 SUPERFAMILY Ankyrin repeat 274 375 IPR036770 -
Bva12g00909 592 SUPERFAMILY POZ domain 63 189 IPR011333 -
Bva12g00909 592 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 3 591 - -
Bva12g00909 592 PANTHER REGULATORY PROTEIN NPR3 3 591 IPR044292 GO:0009862|GO:2000022|GO:2000031
Bva12g00909 592 MobiDBLite consensus disorder prediction 558 592 - -
Bva12g00909 592 Pfam Ankyrin repeats (3 copies) 280 355 IPR002110 GO:0005515
Bva12g00909 592 Pfam BTB/POZ domain 63 149 IPR000210 GO:0005515
Bva12g00909 592 Pfam Domain of unknown function (DUF3420) 226 275 IPR024228 -
Bva12g00909 592 ProSiteProfiles BTB domain profile. 65 141 IPR000210 GO:0005515
Bva12g00909 592 MobiDBLite consensus disorder prediction 565 583 - -
Bva12g00909 592 SMART ANK_2a 298 328 IPR002110 GO:0005515
Bva12g00909 592 SMART ANK_2a 332 361 IPR002110 GO:0005515
Bva12g00909 592 Pfam NPR1/NIM1 like defence protein C terminal 374 575 IPR021094 -
Bva12g00909 592 Gene3D - 266 462 IPR036770 -
Bva12g00909 592 SMART BTB_4 65 191 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00909 Bva-Chr12 9864368 9868456 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bva12g00909 NPR1_like_C 3e-85 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00909 K14508 - gmx:100816582 827.009