Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00880 ATGGCTACGGATCTTAACAGAACGGGTCCTGTAGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTACTTACTCAAATatggaagaagaggaaagcCCAAGTTTTGTCCATTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAGGAGAAACACCTTAAACTAAGCCATGTCTCTAGAATTATATCTGGACAACGCACACCAATCTTTCAAAGGTATCCACGACCTGAGAAGGAATACCAGTCATTTTCTCTTATCTACAATGACAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTtgaaatcattaatttcaCGTAGTCATCAGCGGAAGTGGAGAACAGAATCAAGAAGTGATGGTTATCCATCTGAAGCTAATAGTCCTAGAACATACACTAGAAGAAGTTCTCCCTTAAATTCTCCTTTTGGTAGTAATGACAGCTTGCAAAAGGATAGTGGGGATCACCTTCGTCTTCATAGCCCATATGAGAGCCCCCCTAAGAATGGTTTGGATAAAGCATTATCTGATGTGATTTTGTATGCTGTTCCACCCAAAGGGTTCTTCCCTCCAGATTCTGCCAGTGTTTCAGTCCACTCTATTTCATCAGGTGGGTCAGATAGTGTACATGGTCACATGAAGACAATGGCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGTCAAGGTTCAGGTCATGATGACGGTGATGCCTTAGGAGATGTTTTTATTTGGGGGGAAGGCACAGGTGATGGTGTTTTGGGTGGTGGCACTCACAGAGTTGGGAGTTGTTCTGGTGTAAAAATGGATTCTCTGTTGCCCAAAGCCTTGGAATCTGCTGTAGTACTTGATGTACAGAATATTGCTTGTGGAGGACAACATGCAGCCTTAGTGACAAAGCAAGGAGAGGTTTTCTCCTGGGGGGAGGAATCAGGAGGCAGGCTTGGGCATGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTCTGAGTAACACAAATATCGAACTTGTTGCTTGCGGGGAGTACCATACCTGTGCTGTTACACTTTCTGGTGACCTTTATACATGGGGAAATGGCACTTACAATTATGGTCTTCTCGGGCATGGAAATCAAGTGAGTCATTGGGTCCCAAAAAGAGTAAATGGACCCTTGGAGGGTATACACGTTTCATCTATCTCTTGTGGACCATGGCACACTGCTGTTGTTACCTCTGCTGGgcaattatttacttttggtGATGGTACATTTGGTGTTCTGGGCCATGGAGATCAAAAAAGTGTTTCAATACCAAGAGAAGTAGAGTCCCTCAAGGGTCTCCGTACTGTGCGTGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTGGTGGAAGTCATGGTTGGCAATTCAAGTTCCAGTAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGGCTTGGGCATGGAGACAAGGAAGCAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAACCCAACTTTTGTCAAGTTGCTTGCGGACATAGTCTGACCATTGCACTTACTACCTCAGGTCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAGTTAGGGCATCCTCAAGCTGACAGCAAGCTACCAACTCGTGTTGACGGAAAGCTCTCAAAGAGTTTTGTAGAGGAGATAGCGTGTGGTGCATATCATGTTGCAGTTTTGACTTCAAGAACTGAAGTTTACACATGGGGCAAGGGTGCAAATGGTCGTTTAGGCCATGGAGATACAGATGATAGAAATTCCCCAACATTAGTAGAAGCTTTGAAAGACAAACAGGTCAAAAGTATTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTTCATAAATGGGTTTCTGGTGTTGACCAGTCGATGTGTTCTGGCTGCCGCCTTCCATTTAATTTCAAGAGAAAGCGACATAATTGCTACAATTGTGGACTTGTTTTCTGTCATTCATGCAGCAGTAAGAAATCTCTCAAGGCTTCAATGGCACCAAACCCCAATAAACCTTATCGTGTCTGCGataattgttttaataaaCTAAGGAAAGCTATTGAAACTGATTCTTCATCACATTCTTCTATGAGCAGAAGGGGAAGTATCAATCAAGGGTCACTTGAGTTTATTGATAAGGATGATAAGTTGGATTCCAGATCTCGCAATCAACTTGCTAGATTTTCTTCGATGGAATCCTTGAAGCAAGTGGAAAGCCGGtcttcaaagaaaaacaagaaattggaATTCAACAGTAGTCGTGTTTCACCTGCTCCAAATGGAGGTTCCCAGTGGGGGGCTTTGAATATTTCTAAATCATTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCTTCTGTTCCTGGTTCTAGAATTGTTTCTCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGTTCAACTACTCCAACCCCCACACTGGGAGGACTTACTTCCCCAAAGATAGTTGTGGATAATGCTAAGAGGACAAATGATAACCTCAGTCAGgaagttattaaattaagatCACAGgtGGAAAATCTGACTCGCAAAGCCCAAGTTCAAGAGGTTGAGTTGGAAAGAACAACTAAACAGCTGAAGGAAGCAATAGCTATTGCTGGTGAAGAAACTGCTAAATGCAAAGCAGCAAAGGAAGTAATCAAGTCACTTACTGCCCAGTTGAAGGAGATGGCTGAGAGGCTACCCGTGGGAGCAGCCAGGAACGTCAAATCACCTTCTCTTGCTTCATTTGGTTCCAATCCTGTTTCTAATGAAGTCAGTAATGCTTCTATTGACCGATTGAGCATTCACACGACAACAATGGAACCAGACTTGATTGGATCAAATAACCAGTTACCTTCAAATGGATCAAGCACCATCAGTAACCGAAGTGCAAGTCACAATAAACCAAGCCAGCCAGATGCAACAAATAGAAATGTGAGCAGAACAAAGGAAAGCGAATCTCGTAATGAGTCTGAATGGGTTGAGCAAGATGAACCTGGAGTATATATTACGCTCACCGCCCTACCAGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAGGCAGAACAATGGTGGGCTGAAAATCGGACAAGAGTATATGAACAGTACAACGTGCACATGATCGACAAGTCTACCGTTGGTGTTGGGAGTGAAGACCTGGCTCATTG 3308 0.4247 MATDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKSLISRSHQRKWRTESRSDGYPSEANSPRTYTRRSSPLNSPFGSNDSLQKDSGDHLRLHSPYESPPKNGLDKALSDVILYAVPPKGFFPPDSASVSVHSISSGGSDSVHGHMKTMAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGTHRVGSCSGVKMDSLLPKALESAVVLDVQNIACGGQHAALVTKQGEVFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDQKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTIALTTSGHVYTMGSPVYGQLGHPQADSKLPTRVDGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAIETDSSSHSSMSRRGSINQGSLEFIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDNAKRTNDNLSQEVIKLRSQVENLTRKAQVQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGAARNVKSPSLASFGSNPVSNEVSNASIDRLSIHTTTMEPDLIGSNNQLPSNGSSTISNRSASHNKPSQPDATNRNVSRTKESESRNESEWVEQDEPGVYITLTALPGGVIDLKRVRFSRKRFSEKQAEQWWAENRTRVYEQYNVHMIDKSTVGVGSEDLAH 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00880 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 323 IPR000408 -
Bva12g00880 1102 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Bva12g00880 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 723 IPR013083 -
Bva12g00880 1102 Gene3D - 14 131 IPR011993 -
Bva12g00880 1102 Pfam FYVE zinc finger 651 717 IPR000306 GO:0046872
Bva12g00880 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 310 320 IPR000408 -
Bva12g00880 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 324 375 IPR000408 -
Bva12g00880 1102 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 16 1088 - -
Bva12g00880 1102 Coils Coil 861 902 - -
Bva12g00880 1102 PRINTS Chromosome condensation regulator RCC1 signature 594 615 IPR000408 -
Bva12g00880 1102 PRINTS Chromosome condensation regulator RCC1 signature 433 447 IPR000408 -
Bva12g00880 1102 PRINTS Chromosome condensation regulator RCC1 signature 536 554 IPR000408 -
Bva12g00880 1102 PRINTS Chromosome condensation regulator RCC1 signature 417 433 IPR000408 -
Bva12g00880 1102 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Bva12g00880 1102 PRINTS Chromosome condensation regulator RCC1 signature 307 320 IPR000408 -
Bva12g00880 1102 PRINTS Chromosome condensation regulator RCC1 signature 326 342 IPR000408 -
Bva12g00880 1102 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1088 - -
Bva12g00880 1102 MobiDBLite consensus disorder prediction 137 167 - -
Bva12g00880 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 599 650 IPR000408 -
Bva12g00880 1102 CDD PH_PLC_plant-like 13 123 - -
Bva12g00880 1102 CDD FYVE_like_SF 660 713 - -
Bva12g00880 1102 MobiDBLite consensus disorder prediction 980 1033 - -
Bva12g00880 1102 SUPERFAMILY RCC1/BLIP-II 261 652 IPR009091 -
Bva12g00880 1102 SMART PH_update 22 125 IPR001849 -
Bva12g00880 1102 Coils Coil 917 937 - -
Bva12g00880 1102 Pfam Unstructured region between BRX_N and BRX domain 953 1022 - -
Bva12g00880 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 469 479 IPR000408 -
Bva12g00880 1102 SMART fyve_4 649 718 IPR000306 GO:0046872
Bva12g00880 1102 Pfam Transcription factor regulating root and shoot growth via Pin3 1028 1083 IPR013591 -
Bva12g00880 1102 MobiDBLite consensus disorder prediction 760 798 - -
Bva12g00880 1102 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 417 427 IPR000408 -
Bva12g00880 1102 Gene3D - 239 493 IPR009091 -
Bva12g00880 1102 Gene3D - 494 661 IPR009091 -
Bva12g00880 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 494 543 IPR000408 -
Bva12g00880 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 546 595 IPR000408 -
Bva12g00880 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 324 372 IPR000408 -
Bva12g00880 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 431 479 IPR000408 -
Bva12g00880 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 600 647 IPR000408 -
Bva12g00880 1102 Pfam Regulator of chromosome condensation (RCC1) repeat 375 427 IPR000408 -
Bva12g00880 1102 MobiDBLite consensus disorder prediction 1017 1033 - -
Bva12g00880 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 547 598 IPR000408 -
Bva12g00880 1102 ProSiteProfiles BRX domain profile. 1029 1084 IPR013591 -
Bva12g00880 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 376 430 IPR000408 -
Bva12g00880 1102 MobiDBLite consensus disorder prediction 784 798 - -
Bva12g00880 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 431 482 IPR000408 -
Bva12g00880 1102 MobiDBLite consensus disorder prediction 129 186 - -
Bva12g00880 1102 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 546 IPR000408 -
Bva12g00880 1102 SUPERFAMILY PH domain-like 14 122 - -
Bva12g00880 1102 MobiDBLite consensus disorder prediction 980 1016 - -
Bva12g00880 1102 Pfam Transcription factor BRX N-terminal domain 912 945 IPR027988 -
Bva12g00880 1102 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 655 717 IPR017455 -
Bva12g00880 1102 MobiDBLite consensus disorder prediction 829 857 - -
Bva12g00880 1102 SUPERFAMILY FYVE/PHD zinc finger 651 722 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00880 Bva-Chr12 9723426 9733008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00880 1030 1093 Major Intrinsic Protein MIP AT1G31880 48.438 1.14e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00880 - - gmx:100802464 1929.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00880 12 9723426 9733008 Bva12g00880 12 9723426 9733008 ECH