Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00879 ATGGAGGAGTCAGGTGAATTGCATTCCGAAGAGAATAAAGTTTCTGgggagaaaaataagaaaagaaggcTCAAAACACCAGCCCAGGTTACAGCCTTGGAGAAATTTTACAACGAGCACAAATATCCTacagaagaaatgaaattagaaCTTGCTGGAGAGTTGGGGCTGACAGAAAAGCAAGTTTCTGGATGGTTTTGCCACAGAAggttaaaagataaaagattgTTGAAAGATGAAGCTTATGCTAATGGACGACAAGAACATTCGAGTGGTGTCATCCAGGATCGTGGCAGTGGGCTAGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTACAGGCTTCTTGATCCCAAAGAGGTTGAGAGTCGTGGCCTCTATAGTCATGATTTTTCAGCTGCAGATTTGACTTATGAACACAGAAATCGTTATACAGAAAATGTTAGTGGAATGGATGACACATCATCTGAGAGTGGCTCATCTTTACAATATAAGTCATTTTCTCAAGGTCAGGATCCATACAATTTGGAGCCTTCAACATATTTAACACCAAACAGAGCTATGCCACCCTTAAATCCCAAGAGTGCAACCAACATGGGATATAAACCATCTGGATATTTGAAAGTTAGAGGGGAGATAGATGCTATAACTTCTGTTAAGAAGCAAATAGGAAGGAATTATCGGGAAGATGGCCCACCACTTAGCGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAGGATGGAACTGAAGGTCCAATCCAAGAACCATACTATTCTGCAAATCCTACTATTCCAAGCTCACCAGAAATTTCTCCAGTGAAAAGGCAACTCAGTCTTAGCTCTAGATATGATTCATATAATACCAAATTTAGCCCCCAAGATTTGCATATGGAAGGAGCAGAACTTGGCTCTTTCCATGACTATGATTTCCAGGATAAGAGATCCCACCAGCATGTAAAGCAAAGGCCAACTTTTCACAGTCACGCCAATCCTTTGCCTGGCAGGAAGTCTTCCTTGGATTTGTATGAAGATTCTACTGGAGAAGCGTCTGCTCATAATAGCAAGAAGAATCATAGAATGGTCGCTAAGCATGGTACTGAAGGAATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTATGAAGGGAAGGTTGATGTTAAGCAGGCAAATTCACTGTCACATGGCTATGAAACTATCAATCCAAAGAACACGCAAAGGAGTGAATTTGTAAAATCTAAACCTTCAAATTCAAAACGTATGCCCCATGTTTCTGTTGATTCTGAAGAAAGAGGGCTATCCATAATGACAGCTAAGGGGCCAAAGCTTAACGGAGACCAAAAGGGGAGGATAAAATATCAGGATTTAGATAGAGTCAGGATGCTTCCTAATGAAACAATGGGCGGAGAACAAGTTATGGTTGATGAACCTCTGCAACACAATGTGAAACAGGCACCTGTTGCTGGGATGCAACCACTAAGAAACAGGAGATCTGCTCTGGAGATGCCATCTAGTTTCAGTGAGGACGAAACCGCAGAAACAAGTTCCTCGCTGAATTA 1565 0.4038 MEESGELHSEENKVSGEKNKKRRLKTPAQVTALEKFYNEHKYPTEEMKLELAGELGLTEKQVSGWFCHRRLKDKRLLKDEAYANGRQEHSSGVIQDRGSGLGQDSCGSTKHGDYRLLDPKEVESRGLYSHDFSAADLTYEHRNRYTENVSGMDDTSSESGSSLQYKSFSQGQDPYNLEPSTYLTPNRAMPPLNPKSATNMGYKPSGYLKVRGEIDAITSVKKQIGRNYREDGPPLSVEFDPLPPGAFEDGTEGPIQEPYYSANPTIPSSPEISPVKRQLSLSSRYDSYNTKFSPQDLHMEGAELGSFHDYDFQDKRSHQHVKQRPTFHSHANPLPGRKSSLDLYEDSTGEASAHNSKKNHRMVAKHGTEGMRSDSASNHSDHYEGKVDVKQANSLSHGYETINPKNTQRSEFVKSKPSNSKRMPHVSVDSEERGLSIMTAKGPKLNGDQKGRIKYQDLDRVRMLPNETMGGEQVMVDEPLQHNVKQAPVAGMQPLRNRRSALEMPSSFSEDETAETSSSLN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00879 521 MobiDBLite consensus disorder prediction 351 368 - -
Bva12g00879 521 SUPERFAMILY Homeodomain-like 18 85 IPR009057 -
Bva12g00879 521 MobiDBLite consensus disorder prediction 487 521 - -
Bva12g00879 521 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 520 - -
Bva12g00879 521 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Bva12g00879 521 MobiDBLite consensus disorder prediction 148 174 - -
Bva12g00879 521 MobiDBLite consensus disorder prediction 82 107 - -
Bva12g00879 521 MobiDBLite consensus disorder prediction 149 174 - -
Bva12g00879 521 CDD homeodomain 20 75 IPR001356 GO:0003677
Bva12g00879 521 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Bva12g00879 521 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 520 - -
Bva12g00879 521 MobiDBLite consensus disorder prediction 500 521 - -
Bva12g00879 521 SMART HOX_1 18 80 IPR001356 GO:0003677
Bva12g00879 521 MobiDBLite consensus disorder prediction 315 382 - -
Bva12g00879 521 MobiDBLite consensus disorder prediction 1 27 - -
Bva12g00879 521 Gene3D - 9 92 - -
Bva12g00879 521 MobiDBLite consensus disorder prediction 408 432 - -
Bva12g00879 521 MobiDBLite consensus disorder prediction 88 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00879 Bva-Chr12 9714728 9720131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00879 3 521 Homeobox Transcription Factor Family AT4G03250 37.431 9.59e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bva12g00879 Homeodomain 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00879 - - gmx:100803515 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00879 12 9714728 9720131 Bva12g00879 12 9714728 9720131 ECH