Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00877 ATGATAATGGCAGCACGCGctaagaagaaggaagagagaaagtCGTCCACATGTGACTTTAGTTTAGAGTTTGTGGCTACTACAAGGAGGTTACCTTCGGATTCTGGTGCTTTTGCAGACTGGGCAGCTACTTCCGCCGGCCGCGCTGCCCCGGACGAGCTCTCCCTCGGCTTCAATGCAGGCCCCGCCGCCGCGGTCAGCGGAACTGGCACCGGACCCACCTCTGGTATGTGGTCAGGTGCCACGAGGTCAATCAATTATGGCCTTGCTCCCGCCGAAATGGGCATGTTTGTGGTCGCGCCTGCTTCTTCTTTCCACCATCAATACCAACATCAGCATCAGCACCACGAACCCGTCATGTCCTCTGATCCTCACTCTATCAATGGCTCAAACCCTGCCACTGCACTTGGCGTCGGCGTCATCCCTCTCCTCACTGCCACTCCTTGTCTCGGCCCTACCAATATGGGCGCTGAGAATGAAAGCATTTTGGGTAATCGAAACCGTGGTGGTGGAATTCAATTGTGGCAGGAGCATCAATCCCATTATATGAAGAAGACAAATTTGCTTGAGCATAATAGTAGCTCGGAGAATTTGCTTCTGGCCAGTGGCGGTGGCGGGATAACTGCTTCGGCTACAAATGCCGGAGGAATCACATGTCAAGACTGTGGAAACCAAGCAAAGAAAGATTGTTCTTATAGAAGGTGCAGGAGTTGCTGCAAGAGTAGAGGTTTTGATTGTCCTACTCACGTGAAGAGCACGTGGGTTCCGGCAGCTCGTCGGAGAGAACGACAGCTAATGGTGCAGGCGGCCGGAGCAGCAGCGCCTGGGTCTAGCGGGTCTACTTCTGGTGCCAAGAAACCTAGACTCATTGCTTCACAAACCACAACTACTTCTCACACTTCAACTTCTAATACCACTACTCCTCGGAGTTTCGACACTAGCTCAAGCAATCAagATGCTGGTTTCAAAGAATCATTGCCGGGTCAAGTGCGTGCACCGGCGGTGTTCAAGTGTGTTCGAGTGACGGCGGTTGATGATGGGGAAGATGAGTATGCCTACCAAGCTGTAGTGAAGATTCGAGGACATGTTTTCAAGGGGCTTCTGTATGATCAAGGGGTTGAAAATAGAGATAATAATCCTAATCTCTCCGAGCTGCATTTGGGTGGGCTGCATTTGGGTGGTGGTAATGGCGGCGGCGTGGGGAGGAATGgggcttcatcttcatctccaATGCTTGATCCATCTGATGTTTATGCAGCTTCAGGTGGAGGGTTACTTGGAGGATCAACCTATGGTAATCCAATAAATTG 1310 0.4985 MIMAARAKKKEERKSSTCDFSLEFVATTRRLPSDSGAFADWAATSAGRAAPDELSLGFNAGPAAAVSGTGTGPTSGMWSGATRSINYGLAPAEMGMFVVAPASSFHHQYQHQHQHHEPVMSSDPHSINGSNPATALGVGVIPLLTATPCLGPTNMGAENESILGNRNRGGGIQLWQEHQSHYMKKTNLLEHNSSSENLLLASGGGGITASATNAGGITCQDCGNQAKKDCSYRRCRSCCKSRGFDCPTHVKSTWVPAARRRERQLMVQAAGAAAPGSSGSTSGAKKPRLIASQTTTTSHTSTSNTTTPRSFDTSSSNQDAGFKESLPGQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIRGHVFKGLLYDQGVENRDNNPNLSELHLGGLHLGGGNGGGVGRNGASSSSPMLDPSDVYAASGGGLLGGSTYGNPIN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00877 436 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 93 436 - -
Bva12g00877 436 MobiDBLite consensus disorder prediction 267 325 - -
Bva12g00877 436 Pfam Domain of unknown function (DUF702) 216 374 - -
Bva12g00877 436 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 93 436 IPR007818 GO:0003700|GO:0006355
Bva12g00877 436 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 326 373 IPR006511 -
Bva12g00877 436 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 218 260 IPR006510 -
Bva12g00877 436 MobiDBLite consensus disorder prediction 274 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00877 Bva-Chr12 9687335 9689771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00877 25 417 C2H2 Transcription Factor Family AT5G12330 50.000 9.30e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Bva12g00877 DUF702 5e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00877 - - gmx:100817745 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00877 12 9687335 9689771 Bva12g00877 12 9687335 9689771 ECH