Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00875 ATGACTTCAGTCGTGGAGATCGATGGTCAGCGCCTTGTTAACCATCTTCAGGATCTCAAACTCGAAGATCAAAACCAGACTAGTGAAATGCGGAGTGAAGCAGAGGTTCACGGGGTGGGATTTGGGAACCATAGGGGGATCTGTGCGATATGCTTGGATAATATAGTGCTCCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGTAACATGCATCCTTCGCTGGGCCACATATAGTCAGAAAGTTACTTGCCCTCAATGTAAACATCCATTCGAGTTCCTCAACGTCCATCGTTCACTTGATGGCAGCATCCAGGATTACATGTTTGAGGAAAGTGTTTGCCTTCTTTTGAGGGCCTCATGGTTCAAACCTTTGACTGTGAAAGATCACGTTGTTCATGAAGACATCTACGAAGACACTGAGGACTACTACTATGAATACGAGGACGAGGAAGATGATCTAGATGATGAAGTTTACTATGGTAGTTCATCAAATCTTCGCATAGGCAACCGTAGATGGGGAGACAATGGTTATGTCAGGGCCGGGCGTCAAGAAGCCAGGCCAGTCTATCGACCAAACTCCCAGGATTCAGGAGCAAGTTCGTCGTCCCAACAACcaaagaagcaagaaaaagaGGCTGCAAAACCTGCAACTGGGCGGCGAGCAAAGCGAGCATTGAAACGGGAAGCTGCTGATAAAGCGGCAGCTGCCAAGCATCAGCAGCATTTGGCAAGGTTGGGTAGGTCTTG 758 0.4697 MTSVVEIDGQRLVNHLQDLKLEDQNQTSEMRSEAEVHGVGFGNHRGICAICLDNIVLQETALVKGCEHAYCVTCILRWATYSQKVTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRASWFKPLTVKDHVVHEDIYEDTEDYYYEYEDEEDDLDDEVYYGSSSNLRIGNRRWGDNGYVRAGRQEARPVYRPNSQDSGASSSSQQPKKQEKEAAKPATGRRAKRALKREAADKAAAAKHQQHLARLGRS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00875 252 MobiDBLite consensus disorder prediction 211 242 - -
Bva12g00875 252 SMART ring_2 48 90 IPR001841 -
Bva12g00875 252 ProSiteProfiles Zinc finger RING-type profile. 48 91 IPR001841 -
Bva12g00875 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 251 - -
Bva12g00875 252 SUPERFAMILY RING/U-box 47 97 - -
Bva12g00875 252 ProSitePatterns Zinc finger RING-type signature. 66 75 IPR017907 -
Bva12g00875 252 MobiDBLite consensus disorder prediction 193 210 - -
Bva12g00875 252 MobiDBLite consensus disorder prediction 188 252 - -
Bva12g00875 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 156 IPR013083 -
Bva12g00875 252 PANTHER - 1 251 - -
Bva12g00875 252 Pfam Ring finger domain 48 91 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00875 Bva-Chr12 9673501 9676460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00875 1 251 C3H Transcription Factor Family AT5G19430 58.462 3.40e-89 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00875 - - gmx:100777135 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00875 12 9673501 9676460 Bva12g00875 12 9673501 9676460 ECH