Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00873 ATGGCGGATCACGGCTGCGCCATCTCCCTCACCCATCCCTCTCCAACTTCCGACGATGACTCCTCCGACCAAAGCCCCCGGAGCCTCGCAACCCTCTCCGGCAGCGTCATTGGTGGGTCCTCCTCCAATTCCAGGCTCAGGAAATCCTCACCCTCCGTTGGCTACTCTCTCCAAAGCGGCGGCGCCATCGAGCACCGTCCAGTACCAAGCTCCAAGAAACCAAGAGGCAGGCCACCTGGGTCGAAGAACAAGCCGAAGCCACCCCTCGTGATCACCAAAGAGAACGAGCAGGCCATGAAGCCCGCCGTCCTCGAAATCCCCGCCGGCGCCGACGTGGTGGAGACGATCGTCCAGTTTGCCCGCCGCCGCAACATGAGCATGACGGTGCTGAGTGGGTCCGGAACACTGTCGAATGTTAGAATTCGCCACCCCGTGTCACCCAACCAACTCTTGACCTATACCGGACACTATCCTATGTTGTCCCTTTCTGGGTCTTACATCAGTGGCTCTTATCAAACACCTTCCTCTTCAAAcccatcatcttcttctgctGCTGCTATTGCTGTCCCTTGGCCAGCTTATTCTTCCTTCGGGGTCTGCCTCTTGGGGCCACAAGGGAATTGCTTTGGTGGGATAGTTTGTGGGGAAGTTATTGCTGCGACTCCGATCACTGTGGTGGTGACCACCTTCAAGAACCCTTATTATGAGAAGGTTATGGCCGATGACGATGACGAAGATGATCGTCAAGAGGGGAAAACAGGGGCAAGTTCAGCTGAACAAGGCACTGGTGGCAACAACGCCATGCTTATTGCTGCATACAATGTTGCTGCTGCTAGCCCCCTCAGTTGTCAACCTGCTCATGATGGGCTTCAATGGGGCCATTCTTCTCGCAACCCCAATTACTG 905 0.5481 MADHGCAISLTHPSPTSDDDSSDQSPRSLATLSGSVIGGSSSNSRLRKSSPSVGYSLQSGGAIEHRPVPSSKKPRGRPPGSKNKPKPPLVITKENEQAMKPAVLEIPAGADVVETIVQFARRRNMSMTVLSGSGTLSNVRIRHPVSPNQLLTYTGHYPMLSLSGSYISGSYQTPSSSNPSSSSAAAIAVPWPAYSSFGVCLLGPQGNCFGGIVCGEVIAATPITVVVTTFKNPYYEKVMADDDDEDDRQEGKTGASSAEQGTGGNNAMLIAAYNVAAASPLSCQPAHDGLQWGHSSRNPNY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00873 301 MobiDBLite consensus disorder prediction 241 262 - -
Bva12g00873 301 MobiDBLite consensus disorder prediction 10 57 - -
Bva12g00873 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 11 299 - -
Bva12g00873 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 242 - -
Bva12g00873 301 CDD DUF296 103 230 IPR005175 -
Bva12g00873 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 11 299 IPR014476 GO:0003680
Bva12g00873 301 MobiDBLite consensus disorder prediction 1 92 - -
Bva12g00873 301 ProSiteProfiles PPC domain profile profile. 96 252 IPR005175 -
Bva12g00873 301 Gene3D - 100 247 - -
Bva12g00873 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 232 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00873 Bva-Chr12 9656109 9657014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00873 72 299 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.764 3.60e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00873 - - zju:107410711 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00873 12 9656109 9657014 Bva12g00873 12 9656109 9657014 ECH