Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00870 ATGGCAGCATGCTTGAAGCCACCAAGGAAAGCAGCTAGCATTGAAGATGACTCTGTGATACTCTTCTCAACTTCTAATTCTCCTGAAGAATCCACCAGTCCTTGTTCTTCCTTCTACCATTCACCCTCACCAGTTAACCATCAGCCAAGAGCCGCTTATAAGCTTTCTGTTAGCCACCTCTCCTACACTTTGCACccacaaaaatcaaaacccttttcactttttcaacTGAATCAAAAATCCAAGCCCGTAAATATACTCAACTCCATCTCTTTCGCTGCCAGAAGCTCTGAGATTGTTGCTGTTGTTGGCCCGAGTGGCACTGGCAAGTCTAGTCTTCTTCGCATAATTGCAGGGAGGGTAAGAGATAAAGACTTTGATCCTAAAAGTATCACAATCAATGATCACCCAATGACTAGTCCAGCTCAGTTAAGGAAGGTATGTGGTTTTGTGGCACAAGAGGATTACTTGCTTCCTCTGCTGACTGTGAAGGAAACATTAATGTTCAGTGCCAAGTTCAGGCTAAAAGAAATGACAGCAAGAGATAGAGAAGAGAGGGTGGATAGCTTGATGCAAGAGCTTGGCCTTTTCCATGTCGGGGATAGTTTTGTTGGAGATGAAGAGAATAGAGGGATATCTGgtggagaaaggaaaagggtGTCAATTGGGGTTGACATGATTCACAACCCTCCAATTTTGCTACTTGATGAGCCTACTTCAGGGCTAGACAGCACTTGTGCTCTGCAAGTCATAGAGCTTCTGTCTTCAATGGCGAAAGCAAAGCAACGAACGGTAGTCTTGTCAATTCACCAACCTAGCTACAGAATATTGCAGTACATTTCCAAGTTCTTGATCCTCTCTCATGGTTCAGTTGTTCACCATGGCAGCATTGAATCACTTGAGGAAACCATCACCAAACTGGGATTTCAAATTCCAATTCAACTGAATGCTCTGGAATTTGCCATGGAAATATTACCAGCATTGGAAGATTCTAATTCCAAACATGGCATTTCAAGTGTGGAAGAAAAGGAGCCATTTCTAACCCCAATGTGGCCAGAGGAAGAAATAGGCAGGTTTCAAGCACAGTATAGCAGTAAAGGAATTGGCAATTTCTGTTATCTAAACTTAATTGAAATCTTGTGTCTTTGCTCAAGATTCTGGAAGGTTATTTACAGAACAAAGCAACTCTTGTTGGCCAGAACAATGCAAGCTCTAGTTGGTGGGTTTGGGCTAGGAAGTGTTTATGTAAATATCAGGAGAGATGAAGGAGGAGTTGCAGAAAGGCTAGGCCTATTTGCATTTAGTCTTAGTTTTCTATTGTCTTCTACAGTTGAAGCActtccaatttttcttcaagagAGGTGTGTTCTAATGAAAGAAGCCTCAAGGGGAGCCTATAGAATTTCCTCCTACATGATAGCCAACACACTCGTCTTCCTCCCTTTCTTGTTTCTGGTGTCTATACTTTTCTCAGTTCCTGTGTATTGGATTGTGGGACTCAATCCTTCCCTCGCTGCTTTCGCCTTCTTCGTTTTCGTTGTTTGGCTCATTGTGCTGATGGCTAGTTCTTTAGTGCTTTTCTTAAGTGCAGTGTCTCCTGATTTCATTTCAGGCAATTCTCTCATCTGCACTGTTCTTGGtgccttcttcctcttctctggATACTTCATTCCAAGAGAGAGCATTCCAAAGTTTTGGCTTTTCATGTACTATGTGTCCCTCTATAGGTATCCACTGGATTCGTTGCTCACAAATGAGTATTGGAGCTACAGAAATGAGTGTTTCTCTCAACGGACAGACAATTTAGAGTGTTTGCTGACCGGGTTTGATGTGTTGAAGAGCAAAGGACTTGAGAAGGACACTAGATGGATGAATGTGGGAATCATGCTTGGATTCTTTGTGTTTTATCGCTTTATTTGTTGGGCTATTCTTTCTAAAAAggtttttaaaacaataatatg 1961 0.3983 MAACLKPPRKAASIEDDSVILFSTSNSPEESTSPCSSFYHSPSPVNHQPRAAYKLSVSHLSYTLHPQKSKPFSLFQLNQKSKPVNILNSISFAARSSEIVAVVGPSGTGKSSLLRIIAGRVRDKDFDPKSITINDHPMTSPAQLRKVCGFVAQEDYLLPLLTVKETLMFSAKFRLKEMTARDREERVDSLMQELGLFHVGDSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTCALQVIELLSSMAKAKQRTVVLSIHQPSYRILQYISKFLILSHGSVVHHGSIESLEETITKLGFQIPIQLNALEFAMEILPALEDSNSKHGISSVEEKEPFLTPMWPEEEIGRFQAQYSSKGIGNFCYLNLIEILCLCSRFWKVIYRTKQLLLARTMQALVGGFGLGSVYVNIRRDEGGVAERLGLFAFSLSFLLSSTVEALPIFLQERCVLMKEASRGAYRISSYMIANTLVFLPFLFLVSILFSVPVYWIVGLNPSLAAFAFFVFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPRESIPKFWLFMYYVSLYRYPLDSLLTNEYWSYRNECFSQRTDNLECLLTGFDVLKSKGLEKDTRWMNVGIMLGFFVFYRFICWAILSKKVFKTII 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00870 653 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524
Bva12g00870 653 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 646 - -
Bva12g00870 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 304 IPR027417 -
Bva12g00870 653 Pfam ABC transporter 87 240 IPR003439 GO:0005524
Bva12g00870 653 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 4 646 - -
Bva12g00870 653 Pfam ABC-2 type transporter 270 337 IPR043926 GO:0140359
Bva12g00870 653 Gene3D - 73 324 IPR027417 -
Bva12g00870 653 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 72 313 IPR003439 GO:0005524
Bva12g00870 653 Pfam ABC-2 type transporter 379 587 IPR013525 GO:0016020|GO:0140359
Bva12g00870 653 SMART AAA_5 96 298 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00870 Bva-Chr12 9636320 9638281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00870 81 300 Calmodulin-binding Proteins AT2G36910 29.515 3.11e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00870 K05681 - gmx:100777652 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00870 12 9636320 9638281 Bva12g00870 12 9636320 9638281 ECH