Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00861 ATGGGCAACTGCTGCTCCGGCACCGCGGATGCCCCGGCCTCCACAGATGATAAGGGAGAATCAAACCAGGAAAGTACTAACCAAAACAATGCAGAAGGAGGAAGCGACCACCCCGCAAACTCCACCGGCCCACCACCCAAGCCATCAACTTCAACCTCTACGAAAAACACCAAACCGGGCGCCGTCGGGCCAGTCCTCGGCCGACCAATGGAGGACGTGAAAGCCACCTACTCCATTGGAAAAGAGCTAGGGAGAGGCCAGTTTGGCGTGACACATTTATGCACGCATAAGGCCACGGGACAACAATATGCATGCAAAACAATAGCAAAGAGAAAACTTGCGAATAAAGAGGATATAGAAGATGTTAGGAGGGAGGTCCAAATCATGCACCATTTGGCGGGGCAAGCTAATATTGTGGAGCTAAAGGGTGCCTATGAAGACAAGCAATCGGTGCATTTGGTGATGGAGCTGTGTCATGGAGGGGAGCTCTTTGATCGTATTATTTCAAAGGGTCATTACACAGAGCGTGGAGCAGCTTTGTTGTTAAGGACAATAGTTCAGATCGTCCATACTTGTCATTCAATGGGTGTGATTCATAGAGATCTTAAACCTGAAAATTTCCTCTTGCTCAATAAGGATGAAGATTCCCCCCTCAAGGCCACAGATTTTGGTCTATCCGTTTTTTACAAGCAAGGAGAATCGTTTAAAGATATTGTTGGTAGTGCTTATTACATTGCTCCTGAGGtcttgaagagaaaatatgGCCCAGAGGTTGATATATGGAGTGTTGGTGTCATGCTATACATCCTCCTTTGTGGGAGTCCTCCATTTTGGGCAGAATCTGAGCATGGAATTTTCAATGCCATCTTACGGGGCCACATTGACTTCACAAGTGATCCATGGCCTTCCATTTCACCAGCAGCAAAAGATCTTgtaaagaaaatgttgaattCAGATCCGAAGCAACGGTTGACAGCATACCAAGTCCTGAATCATCCATGGATCAAGGAGGATGGAGAAGCACCAGATAGACCACTTGACAATGCAGTAATGAATAGACTCAAACAGTTCAGAGCAATGAACAAATTCAAGCAAGTTGCTCTAAGGGTCATTGCTGGCTGCCTATCCGAGGAAGAAATCATGGGATTGAAGGAGATGTTCAGGGGAATGGACACTGACAACAGTGGAACCATTACACTTGAAGAGCTCAAGCAAGGGCTTGCTAAGCAGGGAACAAAGCTGACTGAACAAGAAGTCAAGCAATTGCTGGAAGCTGCTGATGCTGATGGAAATGGAACAGTAGATTATGACGAATTCATCACAGCAACGATGCATATGAACCGAATGAACAGAGAAGAACATCTTTACACAGCCTTCCAATACTTTGATAAAGATAATAGCGGGTTCATTACCATTGAAGAACTAGAGCAAGCTCTTCTTGAATATAACATGCATGATGGAAGGGATATCAAGGAAATCCTTTCCGAGGTTGACGGCGACAATGATGGTCGGATTAATTATGACGAGTTTGCGGCAATGATGAGAAAAGGAAACCCAGAAGCCCAAACCGTGAAGAAGAGGCGTGATTCATTTGTTGCTTG 1601 0.4485 MGNCCSGTADAPASTDDKGESNQESTNQNNAEGGSDHPANSTGPPPKPSTSTSTKNTKPGAVGPVLGRPMEDVKATYSIGKELGRGQFGVTHLCTHKATGQQYACKTIAKRKLANKEDIEDVRREVQIMHHLAGQANIVELKGAYEDKQSVHLVMELCHGGELFDRIISKGHYTERGAALLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDEDSPLKATDFGLSVFYKQGESFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGSPPFWAESEHGIFNAILRGHIDFTSDPWPSISPAAKDLVKKMLNSDPKQRLTAYQVLNHPWIKEDGEAPDRPLDNAVMNRLKQFRAMNKFKQVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITLEELKQGLAKQGTKLTEQEVKQLLEAADADGNGTVDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITIEELEQALLEYNMHDGRDIKEILSEVDGDNDGRINYDEFAAMMRKGNPEAQTVKKRRDSFVA 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00861 533 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 24 523 - -
Bva12g00861 533 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Bva12g00861 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Bva12g00861 533 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Bva12g00861 533 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Bva12g00861 533 Pfam Protein kinase domain 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00861 533 Gene3D Phosphorylase Kinase; domain 1 79 162 - -
Bva12g00861 533 SMART efh_1 418 446 IPR002048 GO:0005509
Bva12g00861 533 SMART efh_1 489 517 IPR002048 GO:0005509
Bva12g00861 533 SMART efh_1 382 410 IPR002048 GO:0005509
Bva12g00861 533 SMART efh_1 454 482 IPR002048 GO:0005509
Bva12g00861 533 ProSiteProfiles EF-hand calcium-binding domain profile. 489 520 IPR002048 GO:0005509
Bva12g00861 533 Pfam EF-hand domain pair 383 443 IPR002048 GO:0005509
Bva12g00861 533 Pfam EF-hand domain pair 452 515 IPR002048 GO:0005509
Bva12g00861 533 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Bva12g00861 533 ProSiteProfiles Protein kinase domain profile. 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00861 533 SMART serkin_6 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00861 533 SUPERFAMILY EF-hand 375 515 IPR011992 -
Bva12g00861 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 523 - -
Bva12g00861 533 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Bva12g00861 533 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Bva12g00861 533 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Bva12g00861 533 MobiDBLite consensus disorder prediction 1 69 - -
Bva12g00861 533 ProSitePatterns Protein kinases ATP-binding region signature. 83 110 IPR017441 GO:0005524
Bva12g00861 533 SUPERFAMILY Protein kinase-like (PK-like) 61 361 IPR011009 -
Bva12g00861 533 Gene3D Transferase(Phosphotransferase) domain 1 163 343 - -
Bva12g00861 533 MobiDBLite consensus disorder prediction 15 37 - -
Bva12g00861 533 CDD STKc_CAMK 77 334 - -
Bva12g00861 533 Gene3D - 344 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00861 Bva-Chr12 9584633 9589059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00861 1 531 EF-hand Containing Proteins AT5G12180 79.849 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Bva12g00861 Pkinase 1.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00861 K13412 - gmx:100781355 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00861 12 9584633 9589059 Bva12g00861 12 9584633 9589059 ECH