Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00829 atgtCAAGTGGAGAAACACACTGGTGTTATGAGTGCAGGCTGCCAATATGGATTGAAGGGAGAGATATCACTTGCCCTAACTGTCATGGAGGCTTTGTGCAAGAACTTGGTGAGATGCGAGGCTTTGCGCCAGAGGTTCATCAAACACCTGATATTTTTGATGCCATACATGCTTTCATGCAGCGGAGGGGTTCTGAACCAAGAGTTGGTCTTATGGATGTTGTTGATGGTTTCATGAGGCAGAGAATGGCTAGACGGCACCCAAACTTTGATGTTAGAGGGAGGTCTAGTTCTGCCTCAGGTCCTGAACAGCATTGGGGTGTTTTTGGTTCTGATCCTTATTCGATATTTCAAGGTCTTGGTTCTGATccttatttgatatttcaagGTCAAGTTCCTGGGTTCACTGTGACCAATGGTAGTCCAGGAGTTGGTGCTAGGCGTGTAGATTTTGGCGAGTACTTTATGGGCCCTGGACTGGAAGAACTCATTGAACAGCTCACCATGAATGATAGGCGTGGCCCTCCTCCAGCCTCACGGTCTGCAATCAATGCAATGCCTACTATTAGGATCACACAGACACATCTCCGCTCTGATTCACAGTGTCCTGTCTGTCAAGATAAATTTGAACTCGGCTCTGAAGCTAGGCAGATGCCATGTAACCATATATATCATTCTGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCATGTCCAGTTTGCCGTGTTGAACTTCCACCTCAAGGAGCTAATACTTCTCGTGGCAGTCGAAGATGGGAAGTAAGGATTGATGACAGCAGCACTGACAATGATAGCTCTAGGGGTAGAGAGAATAGTAACCAGAACCATGGAAGGAGAAATCCACTGTCCTTTCTATGGCCATTTCGTTCTTCTAGTTCAAACACTAATCATTATACTGAGACTGGAGGAAACAGCTCTTCTACTACCCATGACCACAACCACAGCAATGGGACTGGTTATAGTGGATGGCCTTTCGATTACTG 1007 0.4518 MSSGETHWCYECRLPIWIEGRDITCPNCHGGFVQELGEMRGFAPEVHQTPDIFDAIHAFMQRRGSEPRVGLMDVVDGFMRQRMARRHPNFDVRGRSSSASGPEQHWGVFGSDPYSIFQGLGSDPYLIFQGQVPGFTVTNGSPGVGARRVDFGEYFMGPGLEELIEQLTMNDRRGPPPASRSAINAMPTIRITQTHLRSDSQCPVCQDKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGANTSRGSRRWEVRIDDSSTDNDSSRGRENSNQNHGRRNPLSFLWPFRSSSSNTNHYTETGGNSSSTTHDHNHSNGTGYSGWPFDY 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00829 335 MobiDBLite consensus disorder prediction 258 282 - -
Bva12g00829 335 CDD RING-H2_RNF126_like 201 243 - -
Bva12g00829 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 322 - -
Bva12g00829 335 SMART ring_2 202 242 IPR001841 -
Bva12g00829 335 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Bva12g00829 335 Pfam Ring finger domain 201 243 IPR001841 -
Bva12g00829 335 SUPERFAMILY RING/U-box 181 251 - -
Bva12g00829 335 MobiDBLite consensus disorder prediction 247 335 - -
Bva12g00829 335 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Bva12g00829 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 249 IPR013083 -
Bva12g00829 335 MobiDBLite consensus disorder prediction 283 328 - -
Bva12g00829 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00829 Bva-Chr12 9397218 9400168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00829 149 258 C3H Transcription Factor Family AT5G01980 42.857 7.32e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00829 K11982 - gmx:100813674 497.664