Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva12g00828 | ATGGCTGTTACCTTTTCAAATCTGCACACCAAATCGGGCCTCAAATCCCTCGATGAATTCCTTTCTGGGAAGACCTATATTTCTGGAGATCACTTGACGAAGGCTGATATCAAAGTTTATGCATTTGTTTTGGAGAAGCCAGGAGACTCTTTCCCCAATGCTAGCAAGTGGTATCACACCGTATCTAGCCAGCTTGCTGCAAGCTTTCCTGGTAAAGCTCAAGGAGTAAGATTTGGTAGCGGAGCTGCTCCAGCTGAAGCTGCTCCTGCCAAGGCTGCggctgatgatgatgatgacctTGATCTCTTCGGTGATGAGACAGAGGAGGAAAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAACCcgcaaagaagaaagaaaGCGGGAAGTCTTCTGTTCTTCTCGATGTCAAACCTTGGGATGATGAGACAGACATGAAGAAGCTAGAAGAGGCTGTTCGTGCCGTTGAGATGCCGGGTCTATTGTGGGGAGCATCCAAACTGGCTCCTGTTGGTTATGGTATCAAGAAGCTGCAGATCATGTTGACTATTGTTGATGACCTTGTGTCCGTGGACTCCCTTATTGAGGAACACCTTACAGTTGAGCCATGCAACGAGTATATCCAGAGCTGTGACATTGTTgccttcaacaaaattta | 662 | 0.4381 | MAVTFSNLHTKSGLKSLDEFLSGKTYISGDHLTKADIKVYAFVLEKPGDSFPNASKWYHTVSSQLAASFPGKAQGVRFGSGAAPAEAAPAKAAADDDDDLDLFGDETEEEKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRAVEMPGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTVEPCNEYIQSCDIVAFNKI | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva12g00828 | 220 | PANTHER | ELONGATION FACTOR 1-BETA 2 | 1 | 220 | - | - | |
| Bva12g00828 | 220 | SUPERFAMILY | eEF-1beta-like | 128 | 220 | IPR036219 | - | |
| Bva12g00828 | 220 | SUPERFAMILY | GST C-terminal domain-like | 8 | 66 | IPR036282 | - | |
| Bva12g00828 | 220 | Pfam | EF-1 guanine nucleotide exchange domain | 133 | 220 | IPR014038 | GO:0003746|GO:0006414 | |
| Bva12g00828 | 220 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 209 | 220 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
| Bva12g00828 | 220 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 220 | - | - | |
| Bva12g00828 | 220 | CDD | EF1B | 129 | 220 | IPR014038 | GO:0003746|GO:0006414 | |
| Bva12g00828 | 220 | Gene3D | - | 124 | 220 | IPR014717 | - | |
| Bva12g00828 | 220 | MobiDBLite | consensus disorder prediction | 108 | 128 | - | - | |
| Bva12g00828 | 220 | Gene3D | - | 3 | 74 | - | - | |
| Bva12g00828 | 220 | SMART | EF1_GNE_2 | 131 | 220 | IPR014038 | GO:0003746|GO:0006414 | |
| Bva12g00828 | 220 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 96 | 104 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva12g00828 | Bva-Chr12 | 9393636 | 9395864 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva12g00828 | 1 | 220 | Eukaryotic Initiation Factors Gene Family | AT5G12110 | 75.439 | 1.05e-107 | 307 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva12g00828 | K03232 | - | twl:119990700 | 315.079 |