Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva12g00827 | ATGGATTCCCatcaaaaaaatcaatttgaagaTGGGTTTGATCAGATTGAAGTTAAAAAGGGGTCAGTTCAAGAAGGGGAGAAGTTGAAGAGATCTCCTGCCGATGATGAGACAGTGGAGAACCCAGCTTCAACAATCAGAATTTGTGATTTCTGTGGCAAAACTTTCAACAGTGGAAAAGCTTTGGGTGGACACAGAAGAAATCACCTTCAAGCTCTGAGAAAAGAAGCAACAGCAGCAGCTCAATCTCAAAAGGTGAAAATTCATCTCCCAAAACCTAAGAATCATGAGAATTTAAGTTATCTCAATGTTACTGATgaagataataattttgtcaagATGAAAGCTTTGATGTCTAAGGAAGGAAAAATCATTTGTGATCTTTGCAACAAGGAATTCCCATCCATGAAGTCCTATTGTGGGCACATGAGAGCCCACTCTGAGAGGAATAGGACCGGTGTTTTGCTTCCTGATGACGATTCTGAGGAACTGAAAGATGTTCATTGTGTTACCAGTAGAACAGTGATTGCACCGCACGAATCACCTATTGATCTGACAAAATCTTTACCAAGTTGGTCTAAGACTGATTTAAGGGGCAGGAAAAGCATTGGTGGTGTTGAGGCTGCTCAAAATCTTGTATATCTCTCTCGCGGAGAGTATATTTCTACTCCCGAGTCTCCTGTCTTGGGCTTGAGTCCTACCATGGTACCTCGAGCCGTGTTTACTAGGGATGCGGTTGAGGCGAAGAGTAGTATTTCTAGGGTTGCAATGCAatgcaaggaaaagaaagttgatGATTCTCCTTCTAGGGAACAAAAAGataagaggaagaaagaatttCATAGAAGAGGTTCACTAGATGGAGAAAACgatgaggaggaggaggagagtGCTAATTGGGGAGAAGAAGAGTTTGAGAAGGATGTGAACGATAATGATAGTCACTTAGATGAAAgcaagatgatgaagaaggagaaaaagagaaagaagatattgAAATTCAAGTCTCTTCAAAGCTCAGAATCTGAAGAAGACCCTCTCATCAAGACTCTAAAGGCACGGGATCATGGGTATAAATGCAACATTTGTGGTAAATCTTTTGCAACTTTCCAAGCCCTAGGGGGGCATACATCCAGCCAcaacaaagggaaaaacaTTGTTAGGACCATGGATGAGTCAGGTGATAAAAATGGTGCTGGTTTTGGAGGACTAGTGATAGAGGAAGCTGACACTGCACAAGGTCTTGGTGATCATCACAGGGGGTCATCCTATTCTAGAAGATCATCAACTTA | 1292 | 0.3731 | MDSHQKNQFEDGFDQIEVKKGSVQEGEKLKRSPADDETVENPASTIRICDFCGKTFNSGKALGGHRRNHLQALRKEATAAAQSQKVKIHLPKPKNHENLSYLNVTDEDNNFVKMKALMSKEGKIICDLCNKEFPSMKSYCGHMRAHSERNRTGVLLPDDDSEELKDVHCVTSRTVIAPHESPIDLTKSLPSWSKTDLRGRKSIGGVEAAQNLVYLSRGEYISTPESPVLGLSPTMVPRAVFTRDAVEAKSSISRVAMQCKEKKVDDSPSREQKDKRKKEFHRRGSLDGENDEEEEESANWGEEEFEKDVNDNDSHLDESKMMKKEKKRKKILKFKSLQSSESEEDPLIKTLKARDHGYKCNICGKSFATFQALGGHTSSHNKGKNIVRTMDESGDKNGAGFGGLVIEEADTAQGLGDHHRGSSYSRRSST | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva12g00827 | 430 | Gene3D | Classic Zinc Finger | 47 | 146 | - | - | |
| Bva12g00827 | 430 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 124 | 151 | IPR013087 | - | |
| Bva12g00827 | 430 | Pfam | C2H2-type zinc finger | 125 | 147 | - | - | |
| Bva12g00827 | 430 | Pfam | C2H2-type zinc finger | 358 | 382 | - | - | |
| Bva12g00827 | 430 | Pfam | C2H2-type zinc finger | 48 | 71 | - | - | |
| Bva12g00827 | 430 | MobiDBLite | consensus disorder prediction | 258 | 329 | - | - | |
| Bva12g00827 | 430 | SMART | c2h2final6 | 358 | 380 | IPR013087 | - | |
| Bva12g00827 | 430 | SMART | c2h2final6 | 47 | 69 | IPR013087 | - | |
| Bva12g00827 | 430 | SMART | c2h2final6 | 124 | 146 | IPR013087 | - | |
| Bva12g00827 | 430 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Bva12g00827 | 430 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 10 | 204 | IPR044653 | GO:0003700 | |
| Bva12g00827 | 430 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 246 | 393 | IPR044653 | GO:0003700 | |
| Bva12g00827 | 430 | SUPERFAMILY | beta-beta-alpha zinc fingers | 355 | 385 | IPR036236 | - | |
| Bva12g00827 | 430 | SUPERFAMILY | beta-beta-alpha zinc fingers | 48 | 146 | IPR036236 | - | |
| Bva12g00827 | 430 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY | 10 | 204 | - | - | |
| Bva12g00827 | 430 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY | 246 | 393 | - | - | |
| Bva12g00827 | 430 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 47 | 69 | IPR013087 | - | |
| Bva12g00827 | 430 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 49 | 69 | IPR013087 | - | |
| Bva12g00827 | 430 | MobiDBLite | consensus disorder prediction | 258 | 288 | - | - | |
| Bva12g00827 | 430 | MobiDBLite | consensus disorder prediction | 303 | 324 | - | - | |
| Bva12g00827 | 430 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 126 | 146 | IPR013087 | - | |
| Bva12g00827 | 430 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 358 | 385 | IPR013087 | - | |
| Bva12g00827 | 430 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Bva12g00827 | 430 | MobiDBLite | consensus disorder prediction | 410 | 430 | - | - | |
| Bva12g00827 | 430 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 360 | 380 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva12g00827 | Bva-Chr12 | 9388894 | 9390292 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bva12g00827 | 16 | 154 | C2H2 Transcription Factor Family | AT2G28200 | 30.000 | 7.91e-09 | 54.7 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Bva12g00827 | zf-C2H2_6 | 8.5e-10 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva12g00827 | - | - | qsu:112033059 | 158.688 |