Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00826 ATGGATTCTtatgaagaaaatcaaattgaagatGGGTTTGATCAGattGAAGATAAGCAAAAGTCAGTTCGAAGAGCTGAGAAGTTGAAGGGATCTCTAGCAGATGAGGGGACAGTTGGTAACCCAGCTTCAACAATCAGAATCTGTGATTTTTGTGGCAAAACATTCAACAACGGAAAAGCTTTGGGTGGACACAGAAGACATCACCTTCAAGCTCAGAGAAAAGAAGCAACTGCAGCTCAATCCCGTAAAAAGGTGAAAATTCGTCTCCCAAATCTTAAGAATTATAAGAATTCAAGTTCTTTCAATTATGTTGAtgaagataataattttttcaaggtGGAAGTTTTGATGTCCAACAGAGGAAAAACCACTTGTGATCTTTGCAACAAGGATTTCCCATCCATGAAGTCCTATTACGGGCACATGAGAACCCACCCAGAGAAGGATAGGAGGGGTTTACGCTCTCCCAATCCTGACGATGATTCTAAGGGACAAAAAGAGACTAGCTTTGTTACCAATAGTACAGTTATTGCACCACATGACGGATCTCCTGTGAATTTGTCAAAATCTTTACCAAGTTTGTCTAAGACTAATTCGAGGGACATGGAAAGCATTGGTGATGCCGAGGCTGCTCAAAATCTTGTATATCTTTCTTGCAGAGAGTACTTCTCTACTCCTAAGTCTCTTATCTTGGGCATGAGTCCTAAAGTTCTAACTCAAACCATGTCCTCAGATGACGCAATTAAGGCTAAGAGTAGCACTTCTGGGATTGCATTGCAATGCAAGGAAGAGAAGGTTGATGATTATCCTTCTAGGGAGCAAAAAGTAGTGAGGAAGAGAAAATTCCATAGAAGAGGTTCACTGATTGGAGGAAAGGATGAGGAGAAGGAAGAGGATGGTGCTAATTGGGGTGAAGAAGAGTGTGAAAAGGATATGAAAGATGATGATAGTCACTTAGAAGAAAGCACGATgatgaagaaggagaagaagataTCGAAATTGATGTCTTCTCAAAGCTCAAAATCTGAAGAAAACCCTCTCATCAAGACTTTAAAGATGCAGCATCGTGAATATAAATGCATCATTTGTGGTAAATCTTTTGCAACTTTCCAAGCCCTAGGGGGGCATACATCCAGccacaacaaaagaaagaacattATTATTAGGACAATGAATGAGCCAGGTGATAACAATGGTGCTGGTTTTATTCCTCAAGTGATCAATGAGACTAATGGTAGTGAACCTAAAGGACTAGTGGTAGAGGAAGCTAACACTGCACAGGATCTTGGAGATCATCAAAGGAGGTTCTCTTCTAGAAGATCATCCGCTGAGACACCATTGAGTGAAGAAGCAGCTTCATCAGTTGGAACCAGTTTGTCTCTGCAATCTTCTCATCAAGAAGTTAGAGGGGCAAGTCCTTTAGCTGTCAGAGCTTTAGATTTTGATCTGAATGAGCCATATGTCATGGACGAACAAAGCAACTA 1487 0.3874 MDSYEENQIEDGFDQIEDKQKSVRRAEKLKGSLADEGTVGNPASTIRICDFCGKTFNNGKALGGHRRHHLQAQRKEATAAQSRKKVKIRLPNLKNYKNSSSFNYVDEDNNFFKVEVLMSNRGKTTCDLCNKDFPSMKSYYGHMRTHPEKDRRGLRSPNPDDDSKGQKETSFVTNSTVIAPHDGSPVNLSKSLPSLSKTNSRDMESIGDAEAAQNLVYLSCREYFSTPKSLILGMSPKVLTQTMSSDDAIKAKSSTSGIALQCKEEKVDDYPSREQKVVRKRKFHRRGSLIGGKDEEKEEDGANWGEEECEKDMKDDDSHLEESTMMKKEKKISKLMSSQSSKSEENPLIKTLKMQHREYKCIICGKSFATFQALGGHTSSHNKRKNIIIRTMNEPGDNNGAGFIPQVINETNGSEPKGLVVEEANTAQDLGDHQRRFSSRRSSAETPLSEEAASSVGTSLSLQSSHQEVRGASPLAVRALDFDLNEPYVMDEQSN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00826 495 MobiDBLite consensus disorder prediction 168 201 - -
Bva12g00826 495 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 19 492 IPR044653 GO:0003700
Bva12g00826 495 MobiDBLite consensus disorder prediction 428 470 - -
Bva12g00826 495 Gene3D Classic Zinc Finger 48 146 - -
Bva12g00826 495 Pfam C2H2-type zinc finger 359 383 - -
Bva12g00826 495 Pfam C2H2-type zinc finger 48 71 - -
Bva12g00826 495 Pfam C2H2-type zinc finger 125 148 - -
Bva12g00826 495 MobiDBLite consensus disorder prediction 142 167 - -
Bva12g00826 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Bva12g00826 495 MobiDBLite consensus disorder prediction 289 346 - -
Bva12g00826 495 Gene3D Classic Zinc Finger 357 386 - -
Bva12g00826 495 MobiDBLite consensus disorder prediction 140 201 - -
Bva12g00826 495 SMART c2h2final6 47 69 IPR013087 -
Bva12g00826 495 SMART c2h2final6 124 146 IPR013087 -
Bva12g00826 495 SMART c2h2final6 359 381 IPR013087 -
Bva12g00826 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 359 386 IPR013087 -
Bva12g00826 495 MobiDBLite consensus disorder prediction 441 470 - -
Bva12g00826 495 MobiDBLite consensus disorder prediction 307 335 - -
Bva12g00826 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Bva12g00826 495 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Bva12g00826 495 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 19 492 - -
Bva12g00826 495 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g00826 495 ProSitePatterns Zinc finger C2H2 type domain signature. 361 381 IPR013087 -
Bva12g00826 495 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Bva12g00826 495 SUPERFAMILY beta-beta-alpha zinc fingers 125 381 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00826 Bva-Chr12 9383288 9384884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00826 356 435 C2H2 Transcription Factor Family AT5G67450 37.363 1.05e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g00826 zf-C2H2_6 1.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00826 - - aprc:113854137 163.31