Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00825 ATGGATTCCTATCAAGAAAATCATATTGAAGATGTGTTTGATCAGggaTCTCCTACCGATAAGGGGACAGTTGAGAACCCAACTTCAACAATCAGAATATGTGATTTCTGTGGCAAAACTTTCAGGAACGGAAAAGCTTTGGGTGGACACAGAAGACATCACCTTCAAGCTCTGAGAAAAGAAGCAGCAGCTGCAACTGCAGCTCAATCCCAACTAAAGGTGAAAATTCATCTCCCAAATCCTAAGAATTATGAGAATCCAAATTCTTTCAGTGATGTtgatgaagataaaaattttatcaagatGGAAGCTTTGATGTCTAAAGGAGGAAAAACCACTTGTGATCTTTGCAACAAGGAATTCCCGTCCATGAAATCCTATTACGGGCACATGAGAACCCACCCTGAGAGGAATGAGACGGGCACTGTTTTGACTCGTAATGATGATTCTAACGAGCTGAAAGAAGATGATTGTGTTACTAGAAGTATAGTTATTGCACCAGTGGAATCACCTATCGATCTAACAAAATCTTTACAAAGCTGGTCTAAGACTGATTTAAGGGGCAGGAAATGCATGGGTGATATTGAGGCTGCTCAAAATCTTGTATATCTCTCTCGGGGAGTGTGCTTTTCTGCTCCTAAGTCTCCTATCTTAGGCATGAATCCTAACTTGCTACCTCAAGCCGCATCCACTGATGATGCAGTTGAGACCAAGAGTAGTACTTCTAGGGTTGCAATGCaattcaaggaaaagaaggTTGATGATTCTCCTTCTAAGGAACAAAAAGTAgtgaggaagaaaaaatttcatagaagAGATTCActgaatggaagaaagaatgaagaagaGGAGGGTGCTAATTGGAGTGAAGAAGAGTGTGAGAAGGATATGAAAGATCACTTAGATGAAAGCAAGATGAAGAATaaggagaagaggaagaagatattgaaattgaagtttCCTCAAAGCTCGGAATCTGAAGAAACCCCTCTCATCAAGATTCTGAAGACACAACCAGATGATGGGTGTAAATGCATCATTTTTGGTAAATCTTTTGCAACTTCTCAAGCCCTAATGGGGCATTCCTCCAACCACTACAAAGGAAAGAACATTATTATTAGGACAATGAATGAGCCAGGTGATAACAATGGTGCTGGTTTTAGTCCTCAAGTGATCAATGAGACTAATGGTAGTGAACCTAAAGGACTAGTGGTAGAGGAAGCTAACACTGCACAGGATCTTGGAGATCATCAAAGGAAGTCCTCTTCTAGAAGATCATCAGCTGAGACACCATTGGGTGAAGAAGCTTCGTCAGTTGGAACCAGTTTGTCTCGTTCTGGTCGTCAAGAAGTTAGAGGGGCAAGTCCTTTAGCTCCCAGAGTTTTAGATTTTGATCTGAATGAGCCATATGTCTCAGacgaaaaaagaaacta 1433 0.374 MDSYQENHIEDVFDQGSPTDKGTVENPTSTIRICDFCGKTFRNGKALGGHRRHHLQALRKEAAAATAAQSQLKVKIHLPNPKNYENPNSFSDVDEDKNFIKMEALMSKGGKTTCDLCNKEFPSMKSYYGHMRTHPERNETGTVLTRNDDSNELKEDDCVTRSIVIAPVESPIDLTKSLQSWSKTDLRGRKCMGDIEAAQNLVYLSRGVCFSAPKSPILGMNPNLLPQAASTDDAVETKSSTSRVAMQFKEKKVDDSPSKEQKVVRKKKFHRRDSLNGRKNEEEEGANWSEEECEKDMKDHLDESKMKNKEKRKKILKLKFPQSSESEETPLIKILKTQPDDGCKCIIFGKSFATSQALMGHSSNHYKGKNIIIRTMNEPGDNNGAGFSPQVINETNGSEPKGLVVEEANTAQDLGDHQRKSSSRRSSAETPLGEEASSVGTSLSRSGRQEVRGASPLAPRVLDFDLNEPYVSDEKRN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00825 477 MobiDBLite consensus disorder prediction 1 25 - -
Bva12g00825 477 MobiDBLite consensus disorder prediction 1 15 - -
Bva12g00825 477 Gene3D Classic Zinc Finger 33 134 - -
Bva12g00825 477 MobiDBLite consensus disorder prediction 381 397 - -
Bva12g00825 477 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 20 195 IPR044653 GO:0003700
Bva12g00825 477 SMART c2h2final6 32 54 IPR013087 -
Bva12g00825 477 SMART c2h2final6 112 134 IPR013087 -
Bva12g00825 477 SMART c2h2final6 343 365 IPR013087 -
Bva12g00825 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Bva12g00825 477 SUPERFAMILY beta-beta-alpha zinc fingers 33 134 IPR036236 -
Bva12g00825 477 MobiDBLite consensus disorder prediction 274 295 - -
Bva12g00825 477 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 240 473 IPR044653 GO:0003700
Bva12g00825 477 Coils Coil 55 75 - -
Bva12g00825 477 MobiDBLite consensus disorder prediction 425 449 - -
Bva12g00825 477 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Bva12g00825 477 MobiDBLite consensus disorder prediction 377 477 - -
Bva12g00825 477 Pfam C2H2-type zinc finger 33 56 - -
Bva12g00825 477 Pfam C2H2-type zinc finger 349 367 - -
Bva12g00825 477 Pfam C2H2-type zinc finger 113 136 - -
Bva12g00825 477 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 240 473 - -
Bva12g00825 477 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 20 195 - -
Bva12g00825 477 MobiDBLite consensus disorder prediction 249 295 - -
Bva12g00825 477 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Bva12g00825 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00825 Bva-Chr12 9377017 9378546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00825 33 142 C2H2 Transcription Factor Family AT2G26940 32.174 9.95e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva12g00825 zf-C2H2_6 7.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00825 - - qsu:112033059 141.739