Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00824 ATGTATAACGAGATGAATGGTGGAGATGGCTGGAAAATGTCTAAGTGTCACGAACCCTCTTCATCAGTTGAAGAAGCAAATGGTGGAGATAACATGGAAGGGGAAGGTCATTTGAAGAAAGGTCCCTGGACATCCGCAGAGGATGCAATTTTGATGGAATATGTCCAAAAGCATGGAGAGGGTAATTGGAATGCCGTTCAAAAGTATTCAGGGCTTGCCCGTTGTGGGAAAAGCTGTCGTCTACGATGGGCAAATCACCTGAGACCAGATTTAAAGAAGGGTGCATTTACTCAAGATGAAGAACGAAAAATCATTGAACTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACTGATAATGAGATAAAGAACTACTGGAATacaagaatgaaaagaagGCAACGAGCTGGCTTACCAATATATCCACCTGACATATGCCAGCGGATGTTGGATAACAgcgaagaaagtccaaatgTGGGTAGCTTGATGAATGGGGACAACCAGCATTCTGATCTCTCACCGGaagacaattttaatattcctGATGtggaattcaaaaatttaaaattcccTCGGGCATATCCACCCTATGGTCCAACCATCTTTAACGTTCCTGAAATCAGCATGTTTGAACAAAGTGCAGCTTCATCCTATAGCTATAATATGATGTTCCCAACCATTCCCCATAAACAACTGCAGAAGTCAGATACTAGTTACAATAGTTTGGATGTTAGTATTGGTGCTGCTGTCCCAGAGTTTAATCATTATGCGGATTATTCTTGTCAGAAAGTTGCTGATCTCCCTAAGCTTTCTTCTCCATGTATTCCTAATCTTAACACCAATCATCAATTTCATGGTAGTTACCTTCCTGGCAGCCATGCCGGTGTAAATGGCAATACCTCTTCTGTGCCCATATCTGGGGACGTGAAGATGGAGCTCCCTTCATTCCAATATTTGGATACCCAAAGAGATTTCTGGGGCATGCGTACATCCCCTGTTCCTTCAGCTGAGTCATTTGATACATTGATCCAGTCTCCTCCAGCTGACCAGACTCAGTTAGATCCGGTTTCTCCGCAGAGAAATGGTTTGTTAGAATCCGTGGTCTATGgatcaaagagaaagagaggttcAAAGAGTAATTTATTCCAGAAGACTGCTGATAATTGTATGCCCAGAAGTTCAACCTTAAATCCTTGTGAGACAGAATGGGAGGAACCATGGGACCCAATTTCTCTCATTGCATCAGTTCTTACCGTACATACTCCTATAAGCATGGGCTCAGTGGATGAACCCCAGTCAGTTGAAACTGCACAGGATCATTATGGTAAGCATGAAACAGTCTTTCAGGACCTAGCTTATTTTCCCAGGAAGAAAGAATATGTGAAGCAGATAGACCTTACAAGGCCAGATGGTTTTTTTGATCTGGGTTGGTTTGGGAATCCTGAAGATGATGGTAAGGATCAATCTTTTCTGAAAGATGCTCTAGGTGCACTTGGTTCTGCAGAATTGATACAGAGTGATCTCAAAGCTTGTGGATTCTGTGAAACACAATACTA 1580 0.4051 MYNEMNGGDGWKMSKCHEPSSSVEEANGGDNMEGEGHLKKGPWTSAEDAILMEYVQKHGEGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTQDEERKIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRMKRRQRAGLPIYPPDICQRMLDNSEESPNVGSLMNGDNQHSDLSPEDNFNIPDVEFKNLKFPRAYPPYGPTIFNVPEISMFEQSAASSYSYNMMFPTIPHKQLQKSDTSYNSLDVSIGAAVPEFNHYADYSCQKVADLPKLSSPCIPNLNTNHQFHGSYLPGSHAGVNGNTSSVPISGDVKMELPSFQYLDTQRDFWGMRTSPVPSAESFDTLIQSPPADQTQLDPVSPQRNGLLESVVYGSKRKRGSKSNLFQKTADNCMPRSSTLNPCETEWEEPWDPISLIASVLTVHTPISMGSVDEPQSVETAQDHYGKHETVFQDLAYFPRKKEYVKQIDLTRPDGFFDLGWFGNPEDDELIQSDLKACGFCETQY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00824 509 MobiDBLite consensus disorder prediction 162 184 - -
Bva12g00824 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Bva12g00824 509 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 87 IPR017930 -
Bva12g00824 509 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Bva12g00824 509 CDD SANT 42 87 IPR001005 -
Bva12g00824 509 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Bva12g00824 509 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Bva12g00824 509 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Bva12g00824 509 MobiDBLite consensus disorder prediction 1 41 - -
Bva12g00824 509 Gene3D - 39 92 - -
Bva12g00824 509 MobiDBLite consensus disorder prediction 162 183 - -
Bva12g00824 509 Gene3D - 95 141 - -
Bva12g00824 509 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 12 488 - -
Bva12g00824 509 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 12 488 - -
Bva12g00824 509 CDD SANT 95 136 IPR001005 -
Bva12g00824 509 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Bva12g00824 509 SMART sant 92 140 IPR001005 -
Bva12g00824 509 SMART sant 39 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00824 Bva-Chr12 9369637 9374124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00824 21 486 MYB Transcription Factor Family AT5G06100 39.549 1.12e-91 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g00824 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00824 K09422 - gmx:100800658 556.984