Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00820 ATGGCTGTTGCGGCCCCTGGGCAGCTCAACGTCAATGAATCCCCTTCCTGGGGATCCAGAAGTGTTGATTGCTTTGAAAAGTTAGAGCAGATTGGTGAGGGGACTTATGGTCAAGTGTACATGGCTAGAGAAATCAGAACAGGTGAAATTGTTGCTCTGAAGAAAATTCGAATGGACAATGAGAGAGAAGGGTTTCCTATTACTGCTATAcgtgaaatcaaaattttaaagaagctACACCATGATAATGTGATCAAGCTGAAAGAAATTGTGACATCACCAGGCCCTGAAAAAGATGAACAAGGGAGGCCAGATGGTAACAAGTATAAAGGTGGCATATATATGGTCTTTGAATACATGGACCATGATTTAACAGGTCTTGCTGACCGACCTGGAATGAGATTTACAATTCCCCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTGCATTATTGTCACATAAATCAAGTACTTCATCGTGATATTAAAGGTTCTAATCTTCTTATAGACAATGAAGGTAATCTAAAGCTTGCAGATTTTGGACTGGCACGGTCATTTTCTAATGATCACAATGCTAATCTTACAAATCGGGTCATTACATTGTGGTACCGgcCCCCAGAGTTGCTGCTAGGTACAACAAAGTATGGGCCGGCTGTTGATATGTGGTCTGTGGGGTGCATTTTTGCGGAGCTTCTCCATGGGAAGCCTATTTTCCCTGGAAAAGATGAGCCAgaacaattaaataagatttttgaGCTGTGTGGAGCACCAGATGAGGTGAACTGGCCTGGGGTTTCTAAGATCCCTTGGTATAATCAATTCAAGCCAACAAGACCAATGAAAAGACGTTTGAGGGAAGTTTTCAGACACTTTGATCGTCATGCTTTGGAGTTGTTGGAGAAGATGCTTACTCTTGATCCTGCCCAGAGAATTACTGCTAAGGATGCACTTGATGCTGAGTATTTCTGGACTGATCCATTACCATGCGATCCCAAGAGTTTACCCAAGTATGAGTCATCACACGAGTTCCAGACAAAGAAAAAGCGCCAGCAACAACGGCAACACGAAGAAAATGCTAAACGTCAGAAAATGCAGCACCCACAGCAACACGGTCGTCTTCCCCCAATTCAGCAATCCGGGCAACCACATGGCCAAATGCGACCAGGACCGAACCAACCAATCCAGCCCCCAGTTGGTGCGGGACCTAGCCATCATTATGGAAAGCCTCGAGGTCCTTCAGGTGGCCCTGGAAGATACCCCCCTGGTGGGAATCCCGGTGGGGGATACAATCACCCCAATCGCGGTGGTCAAGGTGGAGGAGGCGGTTATGGTAGCGGGCCATATCCTCCACAAGGGCGGGGAGCACCATATGGGTCTAATGGTATGCCCGGTGCCGGTCCTCGTGGTGGAGGCGGTGGTGGCTATGGAGTTGGAGCTCCAAATTATGGCCAAGGTGGTCCATATGGTGGGTCTGCAGCCGGTCGGGGCTCTAACATGATGGGTGGAAACCGCAATCAACAGTATGGTTGGCAGCAATA 1544 0.4631 MAVAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIRTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHDNVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTIPQIKCYMRQLLTGLHYCHINQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKMQHPQQHGRLPPIQQSGQPHGQMRPGPNQPIQPPVGAGPSHHYGKPRGPSGGPGRYPPGGNPGGGYNHPNRGGQGGGGGYGSGPYPPQGRGAPYGSNGMPGAGPRGGGGGGYGVGAPNYGQGGPYGGSAAGRGSNMMGGNRNQQYGWQQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00820 514 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00820 514 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Bva12g00820 514 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00820 514 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00820 514 MobiDBLite consensus disorder prediction 335 514 - -
Bva12g00820 514 CDD STKc_CDK9_like 25 324 - -
Bva12g00820 514 MobiDBLite consensus disorder prediction 500 514 - -
Bva12g00820 514 MobiDBLite consensus disorder prediction 337 366 - -
Bva12g00820 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Bva12g00820 514 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Bva12g00820 514 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Bva12g00820 514 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Bva12g00820 514 PANTHER CELL DIVISION PROTEIN KINASE 5 451 - -
Bva12g00820 514 MobiDBLite consensus disorder prediction 373 390 - -
Bva12g00820 514 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00820 Bva-Chr12 9340560 9344231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00820 1 514 Core Cell Cycle Gene Families AT5G10270 77.395 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Bva12g00820 Pkinase 1.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00820 K08819 - mnt:21403150 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00820 12 9340560 9344231 Bva12g00820 12 9340560 9344231 ECH