Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00791 ATGGCACATAGGTTGCTGCGGGACCTAGAAGCTGATGGTTGGGAGCGCTCTGACTTCCCCATCATCTGTGAATCGTGCCTCGGTGACAACCCTTATGTCCGCATGACAAGGGCTGATTATGACAAAGAGTGCAAGATTTGTACACGGCCATTCACAGTTTTTAGATGGAGGCCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGcagtaaattgaaaaatgtttgTCAAGTTTGCCTTTTGGATCTTGAGTATGGACTGCCAGTGCAAGTGCGGGACACTGCTCTCAGCATCAATTCCAATGATGCAATTCCAAAGAGTGATGTTAACAGGGAGTATTTTGCTGAAGAACATGACCGCAGgGCTAGGGCTGGTATAGATTATGAATCCTCTTATGGGAAAACACGTGCAAATGATACCATCCTGAAGCTTCAAAGGACAACACCGTATTACAAAAGAAACCGAGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTACAGGCATGAGATGCCTGAAACTGGGGAATTGtcacaacaaaatataaaggatCGTTATTATGGAGTGAACGATCCAGTGGCACTGAAGTTACTCGGTAAGGCAGGAGAGATGACCTCCCTTGAGCCTCCTGAAGATGAGAGCATTAGAACTCTATATGTTGGTGGACTTGATGCCAGGGTCAGCGAGCAGGATCTGCGGGATCACTTCTACGCCCATGGTGAAATTGAATCCATTAAGATGGTCCTCCAACGGGCTTGTGCTTTTGTAACCTACACAACCAGAGAAGGTGCAGAAAAGGCAGCAGATGAGCTCTCCAACAAACTGGTCATCAAGGGCCTGAGGCTAAAACTGATGTGGGGCAGACCACAGACAGCAAAACCAGAGTCTGAAAGCTCGGATCAAGCAAGGCAGCAAGCTTCTGTGGCTCATAGCGGCTTGTTGCCGCGAGCTGTTATATCACAGCAGCAGAACCAGGACCAGGCCCAGGGAATGCATTACTATAACATTCCACCCACTCAGCAGCAGGAAAGAAGCTATTACCCATCCATGGATCCTCAAAGAATGGGTGCCCTTGTTCCCTCTCAGGAAGGTCCGCAAGGTGGCCCGTCTGCATCTGGAGAAAATAAACCCGGCTTGGAGAAGCAGCAATACCCTCCTCATTTGATGCCCCCACCTCCTGGGCAACAATATCACAATCCCTATTATCCTCCATACGGTTATATGCCGCCACCGGTTCCTCCCTATCAACAGTACCCACCACCATACAATGCTCCAATGGCGCCTTCACAGCCACCACCTGCAAGTCAGCCCTATCAGCATTCTGTGCCACCGGGATCTGCACCGGCTGAATCTGGAGCATCAGCATCTGGGTCGCAGCAGCAGTG 1421 0.4842 MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKTRANDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDESIRTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAADELSNKLVIKGLRLKLMWGRPQTAKPESESSDQARQQASVAHSGLLPRAVISQQQNQDQAQGMHYYNIPPTQQQERSYYPSMDPQRMGALVPSQEGPQGGPSASGENKPGLEKQQYPPHLMPPPPGQQYHNPYYPPYGYMPPPVPPYQQYPPPYNAPMAPSQPPPASQPYQHSVPPGSAPAESGASASGSQQQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00791 473 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Bva12g00791 473 MobiDBLite consensus disorder prediction 396 451 - -
Bva12g00791 473 Pfam Torus domain 138 194 IPR032297 -
Bva12g00791 473 Gene3D - 149 206 - -
Bva12g00791 473 MobiDBLite consensus disorder prediction 301 321 - -
Bva12g00791 473 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Bva12g00791 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Bva12g00791 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Bva12g00791 473 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 461 IPR039171 GO:0003723
Bva12g00791 473 SMART rrm1_1 229 297 IPR000504 GO:0003723
Bva12g00791 473 Gene3D - 212 311 IPR012677 -
Bva12g00791 473 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
Bva12g00791 473 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 461 - -
Bva12g00791 473 MobiDBLite consensus disorder prediction 354 473 - -
Bva12g00791 473 CDD RRM_RBM22 227 300 - -
Bva12g00791 473 MobiDBLite consensus disorder prediction 304 320 - -
Bva12g00791 473 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00791 Bva-Chr12 9164709 9168856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00791 218 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.615 4.12e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00791 K12872 - gmx:100779917 756.133