Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00759 ATGCAGAGGAAGAAGGCGAAGTCTGGTGGATTTGAGTCCTTAGGTCTGAGTCCCAATGTCTACAAAGGAATCAAACGAAAAGGGTATAAAGTGCCCACTCCAATTCAGAGGAAAACTATGCCTATTATTCTTTCCGGGTCTGATGTTGTGGCCATGGCTCGTACTGGGTCTGGCAAGACCGCTGCTTTTCTCATCCCTATGCTTGAGCGTTTGAACCAGCATCTTCCTCAGGGCGGGGTCAGAGCTCTCTTTCTGTCCCCAACTAGAGATTTGGCGCTTCAGACTTTGAAGTTCACCAAAGAGCTGGGCCACTTCACAGATCTTCGTATTAGTTTACTAGTTGGTGGGGATAGCATGGAAAGCCAATTTGAGGAGTTAGCTCAGAACCCTGATATCATAATTGCAACACCTGGTAGGCTTATGCACCATTTGTCTGAAGTCGATGACATGTCATTGAGGACAGTGGAGTATGTTGTTTTTGATGAGGCGGATTGTTTATTTAGCATGGGTTTTGCTGCGCAATTGCATCAAATTCTTGCACAACTTGGTGAGAATCGTCAGACTTTACTTTTCAGTGCTACACTACCCAGTGCCCTTGCTGAATTTGCTAAGGCTGGTTTGCGAGACCCCCAACTTATTAGGCTGGATTTAGACACTAAAATCAGCCCTGACTTGAAGCTTGCATTTTTCACCTTACGTCAAGAAGAAAAGTACGCTGCATTACTTTATTTGATCAGGGAGCAAATTAGTTCTGATCAGCAGAGTTTAATATTTGTATCCACAAAGCATCATGTGGAATTTCTTAATACATTGTTTAGGGAAGAGAATATTGAGCCATCTGTATGTTATGGTGACATGGACCAAGATGCTCGTAAAATCCATATATCAAGGTTCAGGGCAAGGAAGACAATGTTTCTGATTGTGACGGATGTTGCTGCTCGGGGCATTGACATTCCATTGCTTGATAATGTTATTAACTGGGACTTTCCTCCTAAGCCTAAAATATTTGTTCATCGTGTTGGAAGGGCAGCAAGAGCTGGTCGTAGTGGCACTGCTTATTCATTTATGACATCAGAGGATATGCCTTACCTTTTAGatcttcatctatttctctcCAAACCAATCAAAGCTGCTCCAACTGAGGAAGAGGTTTTTCATGACAGGGATGGAGTAATgttcaaaattgaccaaataATAGCAAATGGAGGAACTGTCTATGGTCGTTTTCCCCAAGAACTCATTGACCTTGTTTCAGATAGAGTTCGGGAAGTCATTGCTTCTTCTGCAGAACTGATTTCCTTGCAGAAAACCTGTCAAAATGCATTtcgtttatatttaaagacaAAACCCTTACCTTCAAAGGAGTCCATTAGAAGAGTAAAGGATTTACCCCAGGAGGGGCTGCATCCAATATTCAAGAATGTATTGGAAACTGGGGAGTTAATGGCGCTTGCATTTTCGGAGAACTTGAAAAAGTTTAGGCCGAAGCAGACTATTTTGGAAGCTGAAGGTGAAGCAGCTAAATTAAAGCATATGCAGGGTACTTCTAAACAATGGGTTGATgtgatgaagagaaaaagagccATTCATGaggaaattataaataaggtTCATAAAGAGCGCTCTAAGAGTCAAGTGGAAAAGGAGGAGAATCTATTGGAAATTACTCCTGTGGAAGACCAgagtaaagagagaaaagTGGCTGCAGGTTCTAAGAGAAAGATACAAAGTTTCAAGGATGAGGATTACTATATAAGTTCCATACCCAAAAATCATCACATGGAATCAGGCCTTTCAGTAAGAGCTAATGAAGAATTTGGTTCAAATAGATTGGATACAGCTGTCCTAGATCTTGTCGCAGATGATAGTACTGGCATTCAGAAACAAAAATCTGTATACCATTGGGACAAGaaaagtaaaaagtatATCAAGTTAAACAATGGTGAACGTGTTGCAGCAAATGGAAAGATAATAAAAACAGAGAGTGGTGCAAAAGCCAAGGCCAACAAGACTGGTATATATAAGAAGTGGAAAGAACGTTCGCATAATAGGATATCTCATAAGGGGACAGATGGTGAACGTGATACTCAGGCATCCACAAGTTTGGCAGCATATCGCAAAGGTGGCCGTAACTTTAAGCATGGCAAGAAGCAGAATTCAGTTCCCAATTCTCATGTGCGTTCAGAAATCAAAGATATAGATCAAATTCGGAAAGAGAGGCAGAAGAAATCCAACAGAATTTCCCATATGAAGAACAAGTCTTCCAAAGGTAAAAAATTTGGTAGAAATGGTAAAAAAGGTAAGGCAAGGAAGAAGTG 2318 0.3934 MQRKKAKSGGFESLGLSPNVYKGIKRKGYKVPTPIQRKTMPIILSGSDVVAMARTGSGKTAAFLIPMLERLNQHLPQGGVRALFLSPTRDLALQTLKFTKELGHFTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFSMGFAAQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLIRLDLDTKISPDLKLAFFTLRQEEKYAALLYLIREQISSDQQSLIFVSTKHHVEFLNTLFREENIEPSVCYGDMDQDARKIHISRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRSGTAYSFMTSEDMPYLLDLHLFLSKPIKAAPTEEEVFHDRDGVMFKIDQIIANGGTVYGRFPQELIDLVSDRVREVIASSAELISLQKTCQNAFRLYLKTKPLPSKESIRRVKDLPQEGLHPIFKNVLETGELMALAFSENLKKFRPKQTILEAEGEAAKLKHMQGTSKQWVDVMKRKRAIHEEIINKVHKERSKSQVEKEENLLEITPVEDQSKERKVAAGSKRKIQSFKDEDYYISSIPKNHHMESGLSVRANEEFGSNRLDTAVLDLVADDSTGIQKQKSVYHWDKKSKKYIKLNNGERVAANGKIIKTESGAKAKANKTGIYKKWKERSHNRISHKGTDGERDTQASTSLAAYRKGGRNFKHGKKQNSVPNSHVRSEIKDIDQIRKERQKKSNRISHMKNKSSKGKKFGRNGKKGKARKK 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00759 772 Gene3D - 1 216 IPR027417 -
Bva12g00759 772 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 2 768 - -
Bva12g00759 772 MobiDBLite consensus disorder prediction 672 772 - -
Bva12g00759 772 Pfam Helicase conserved C-terminal domain 236 347 IPR001650 -
Bva12g00759 772 Coils Coil 733 753 - -
Bva12g00759 772 CDD SF2_C_DEAD 232 355 - -
Bva12g00759 772 Gene3D - 228 450 IPR027417 -
Bva12g00759 772 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Bva12g00759 772 Pfam DEAD/DEAH box helicase 33 200 IPR011545 GO:0003676|GO:0005524
Bva12g00759 772 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 768 - -
Bva12g00759 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 365 IPR027417 -
Bva12g00759 772 MobiDBLite consensus disorder prediction 742 772 - -
Bva12g00759 772 CDD DEADc_DDX54 9 214 - -
Bva12g00759 772 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 237 386 IPR001650 -
Bva12g00759 772 Pfam DBP10CT (NUC160) domain 617 679 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Bva12g00759 772 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Bva12g00759 772 MobiDBLite consensus disorder prediction 672 694 - -
Bva12g00759 772 SMART helicmild6 266 347 IPR001650 -
Bva12g00759 772 MobiDBLite consensus disorder prediction 727 741 - -
Bva12g00759 772 SMART ultradead3 28 235 IPR014001 -
Bva12g00759 772 SMART DBP10CT_2 617 680 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00759 Bva-Chr12 8996314 9001586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00759 11 380 Eukaryotic Initiation Factors Gene Family AT1G72730 33.871 7.10e-61 209