Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00748 ATGTTCTTAACCTTAAACCTCAACGGAAAAATTTCCCACAACATGCCTTCCTTCAATTATTCCCTATCGTCAATCCTTCACATCTCCATAATTGGTTTCTTCCTCTTACTTTCACCCTGCAGAGCAAATGATACTTTCAAGTTCTACAACTGCACAGGCAACGACACTTTTGCTCCAAATAGTCCTTACCAAATCAACTTGAACACCCTTTTAACATCTCTTTCCGCCACAGCTTCAGCTTCCGGCAAAGCCACCGGCTTCAACACCACCGTGGTCGGCGGCGCAAACCAACAGGACACCGTCTATGGCCTTTTTATGTGCAGTGGATCCGCCAACACTCAGCAATGCAGTGAGTGTGTGGCAAATGCAACCAAGGAAATTACTTCACTGTGTGCTTTCAAAATGGAAGCTTTGGTCTGGTTCACCGATTGCTTGGTTCGCTACTCGAGCTGGCCTTTCTTTGCTGCCATGGATGAAAAGCCTATGCGCTGTGTGAATAACAAGGAGGATTACAGGGGTGAAATTGAGGAATTCAACGAAGATTTGAAGTCTTTGATGGAGGATCTGATAAACCAAGCCAGtggaaatttgaagaaacGTGCTGGAAATAGAAGGTCTTTACCAGGGGACAAAGTACTGTATGGCCTAGCTCAGTGTATCCCTGATCTTTCAAGTGATAATTGCAGTAAGTGCCTGGAAGATGCTGTGAACGATCTTCAAAACTCATGTACTAAAGACAAGATTGGAGGAAGAATTCTATACCCAAGTTGTATGGTTAGATATGAATCATACATCTTTTTCTCTACTAGTCTTCTTAaagGAAAAAGTAAAACCCCATATCTAGAAATTGCCATGATTGTTGTTGCAATTTTCATATTGTTGCTCATTTTCTATTGTGGGTATCGTTTGGTAAGTAGGAAAAAGAGGAAGATCAATCTCAAGGATCTAAAAGttgaagaagaagatatcaGTAACGAGATGAAGTCCTTGCAATTTGATTTGGGTACAATTGAAGCTGCTACAAACAATTTTTCTGATGAGGATAAGATTGGGGAAGGTGGCTTTGGATCTGTTCATAAGgGGAAGCTTTCTAATGGAGAAGAAATAGCTGTAAAGAGGCTCTCAAGGAATTCCAGTCAAGGAGATATAGAATTTAAGAATGAGGCTTTACTAATAGCCAAGCTTCAACACAGAAATCTTGTGAGATTGTTGGGATTTTGCactgaaggagaagaaaagataCTTGTTTATGAATTTGTGCAAAACAAGAGTCTTGATTACCATCTATTCAATCGGAAAAGTCAGAGATGTCTAACTTGGGCTGAACGTTATAGGATCATAGGAGGGATTGCTCGAGGAATTCTTTACCTCCATGAAGATTCTCGTCTTAAAATCATACACCGTGATCTCAAACCCAGCAACATCTTGTTAGATAGTGGAATGAATGCAAAGATCTCAGATTTTGGCCTTGCAAGAATTGTTGGTTTGGAAGAAAGGGAAGGAAGTACAAGGAGAATTGCTGGCACATATGGTTATATGTCTCCGGAATATGCAATGCACGGCTTATTTTCGGTTAAATCCGATGTGTTCAGCTTCGGGGTCATGGTTCTCGAGATTATTAGTGGGAAGAGAAATGCTTATTTCCAAGAACCAAACTCTTCAGGAGACCTCCTGAGCCATGCTTGGAAATTGTggagagaagaaagaccatTGGCATTGTTGGATCCTGCATTAGAAGAAACAGTTTCTGAAACTGAAGTGATTAGATGCATTCAGATTGGGTTACTTTGCGTTCAAGAAAACCCAGATGACAGGCCAACAATGGCAACAATTGCTTtgtattttagtttctctGTGGATCTGCCAATGCCTTCAGAGCCACCACTCTTCCTTCAGGGAAAGGCAAAGTCAAGGGTGCCCATGGAAGAGTTAGAGTCTATGCAGTCTGTGACCAATTCAGTATCATTATCTGTTAGTGACATTTCCAGGAGTAAATCCTTCCCTAGATA 2009 0.3957 MFLTLNLNGKISHNMPSFNYSLSSILHISIIGFFLLLSPCRANDTFKFYNCTGNDTFAPNSPYQINLNTLLTSLSATASASGKATGFNTTVVGGANQQDTVYGLFMCSGSANTQQCSECVANATKEITSLCAFKMEALVWFTDCLVRYSSWPFFAAMDEKPMRCVNNKEDYRGEIEEFNEDLKSLMEDLINQASGNLKKRAGNRRSLPGDKVLYGLAQCIPDLSSDNCSKCLEDAVNDLQNSCTKDKIGGRILYPSCMVRYESYIFFSTSLLKGKSKTPYLEIAMIVVAIFILLLIFYCGYRLVSRKKRKINLKDLKVEEEDISNEMKSLQFDLGTIEAATNNFSDEDKIGEGGFGSVHKGKLSNGEEIAVKRLSRNSSQGDIEFKNEALLIAKLQHRNLVRLLGFCTEGEEKILVYEFVQNKSLDYHLFNRKSQRCLTWAERYRIIGGIARGILYLHEDSRLKIIHRDLKPSNILLDSGMNAKISDFGLARIVGLEEREGSTRRIAGTYGYMSPEYAMHGLFSVKSDVFSFGVMVLEIISGKRNAYFQEPNSSGDLLSHAWKLWREERPLALLDPALEETVSETEVIRCIQIGLLCVQENPDDRPTMATIALYFSFSVDLPMPSEPPLFLQGKAKSRVPMEELESMQSVTNSVSLSVSDISRSKSFPR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00748 669 ProSiteProfiles Gnk2-homologous domain profile. 45 153 IPR002902 -
Bva12g00748 669 Coils Coil 313 333 - -
Bva12g00748 669 Pfam Protein tyrosine and serine/threonine kinase 347 612 IPR001245 GO:0004672|GO:0006468
Bva12g00748 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 282 660 - -
Bva12g00748 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 34 270 - -
Bva12g00748 669 Gene3D Phosphorylase Kinase; domain 1 303 419 - -
Bva12g00748 669 Gene3D Transferase(Phosphotransferase) domain 1 420 617 - -
Bva12g00748 669 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Bva12g00748 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 282 660 - -
Bva12g00748 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 34 270 - -
Bva12g00748 669 MobiDBLite consensus disorder prediction 642 669 - -
Bva12g00748 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Bva12g00748 669 Gene3D - 43 153 IPR038408 -
Bva12g00748 669 Gene3D - 161 266 IPR038408 -
Bva12g00748 669 ProSiteProfiles Protein kinase domain profile. 344 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00748 669 SUPERFAMILY Protein kinase-like (PK-like) 329 633 IPR011009 -
Bva12g00748 669 Pfam Salt stress response/antifungal 51 149 IPR002902 -
Bva12g00748 669 Pfam Salt stress response/antifungal 164 264 IPR002902 -
Bva12g00748 669 CDD STKc_IRAK 350 612 - -
Bva12g00748 669 MobiDBLite consensus disorder prediction 644 669 - -
Bva12g00748 669 ProSiteProfiles Gnk2-homologous domain profile. 159 266 IPR002902 -
Bva12g00748 669 SMART serkin_6 344 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00748 669 Coils Coil 168 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00748 Bva-Chr12 8893686 8896702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00748 31 669 Receptor kinase-like Gene Family AT4G05200 42.879 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Bva12g00748 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00748 - - mtr:MTR_3g079850 644.039