Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00735 ATGATAGGGTTTGGAGACAACAGTTGCAGTGGGCTTTCTTCCATGGACATGCTGATGCCACTAACAAATAGGCAGTTTCATCCTAACAACAACAGTTCCGTTGCAGCTCAGAGTAGCAGTGGCCAAAGGGTTTCTGCTGCTTTGAACAACATGGATCAAGATCATGACTATGGCCAGGGAACAAACGGTGGCAGTGTGAGGGCTAAGATCATGGCACACCCTCTTTTTCCTAAGCTCTTGTCTGCTTATCTCAATTGCCAGAAGGTTGGAGCACCTCCCGAAGTGGTGGCCAGGTTAGAGGAGGCATGTGCCAAAGCTCAATCCTCCAATATGGGCAGGACTGGAACTGGTACTATAGGTGAAGACCCAGCATTGGATCAATTCATGGAGGCATACTGTGAGATGCTTATCAAGTATGAGCTAGAGCTCTCAAAACCCTTCAAAGAAGCCGTGATGTTCCTTTCAAGGATGGAGTGTCAGCTCAAAACTCTAGCAGTTTTAACAGATTCTTCTGCTCAAAGTGGATCTTCTTCTCAAGATGAGCTTGATGTCCATCAAAATAACATAGACCCTCAAGCCGAAGACAGAGAACTGAAAGTTCAACTTCTGCGAAAGTACAGTGGATATCTAGGCAACCTCAAGCAGGAATttctgaagaagaaaaagaatgggaAATTACCCAAGGAAGCTCGCCAACAGTTGCTAGAGTGGTGGAGCAGACATTATAAATGGCCTTATCCAACGGAATCCCAGAAGCTGGCGCTGGCAGAATCCACAGGTTTAGATCTGAAGCAGATCAACAACTGGTTTATCAACCAGAGAAAACGCCATTGGAAGCCATCTGAGGATATGCAATTTGTTGTGATGGAGCCAACTAACTCTCCCCACTACTTGGAAAGTGTTATGTGCAGGCCTTTCTCCATGGATGGCATGCCTATGCTCCTTTG 947 0.452 MIGFGDNSCSGLSSMDMLMPLTNRQFHPNNNSSVAAQSSSGQRVSAALNNMDQDHDYGQGTNGGSVRAKIMAHPLFPKLLSAYLNCQKVGAPPEVVARLEEACAKAQSSNMGRTGTGTIGEDPALDQFMEAYCEMLIKYELELSKPFKEAVMFLSRMECQLKTLAVLTDSSAQSGSSSQDELDVHQNNIDPQAEDRELKVQLLRKYSGYLGNLKQEFLKKKKNGKLPKEARQQLLEWWSRHYKWPYPTESQKLALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMEPTNSPHYLESVMCRPFSMDGMPMLL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00735 315 SMART KNOX2_2 115 166 IPR005541 GO:0003677|GO:0005634
Bva12g00735 315 Pfam KNOX2 domain 119 164 IPR005541 GO:0003677|GO:0005634
Bva12g00735 315 SUPERFAMILY Homeodomain-like 219 293 IPR009057 -
Bva12g00735 315 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Bva12g00735 315 MobiDBLite consensus disorder prediction 22 44 - -
Bva12g00735 315 SMART KNOX1_2 64 108 IPR005540 GO:0003677|GO:0005634
Bva12g00735 315 Gene3D - 215 286 - -
Bva12g00735 315 CDD homeodomain 229 281 IPR001356 GO:0003677
Bva12g00735 315 SMART HOX_1 219 284 IPR001356 GO:0003677
Bva12g00735 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 305 - -
Bva12g00735 315 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Bva12g00735 315 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Bva12g00735 315 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 10 305 - -
Bva12g00735 315 Pfam ELK domain 197 218 IPR005539 GO:0003677
Bva12g00735 315 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Bva12g00735 315 Pfam KNOX1 domain 66 105 IPR005540 GO:0003677|GO:0005634
Bva12g00735 315 SMART ELK_2 197 218 IPR005539 GO:0003677
Bva12g00735 315 Coils Coil 315 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00735 Bva-Chr12 8803332 8807558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00735 66 309 Homeobox Transcription Factor Family AT1G62360 68.235 2.64e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva12g00735 KNOX2 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00735 - - gmx:100791704 428.713