Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00709 ATGCGACGGGGCAGGGCCGCCGCAGATCCAACAGCAGCCAAAGCAACCGATCAAGATTCGAACAACGCAGCTAAGGAAATCAGATTCAGAGGGGTCAGAAAGCGTCCATGGGGTCGATTCGCTGCCGAGATCAGAGATCCATGGAAAAAGGCTCGGGTTTGGCTCGGCACCTTCGATTCGGCCGAGGATGCTGCTCGTGCTTATGACGCTGCGGCTCGTTCTTTTCGTGGACCCAAGGCTAAGACAAATTTCCCTTTGTCGAACCCTGAATCGGGTATGTCTCAGATTCCTCTGTATCAGCGAGATTTCGACGATAATCATAATGGGTTTTCCAAGTTCGATCAGGTTCACGTTAATCGGCCAACCACGAGCAGCATGAGCAGCACCGTTGAATCATTCAGCGGACCCAGGGTTTCGAATCCGATTCCGTCCATCCCTCGGGCCCACCGGCGACCCGTTAACCCGGTTCCGATCGAGGATTGTCACAGTGACTGcgattcttcttcttcggTGATCGATGATGAAGATTGTGTTCTTACCTCTTCATTCCGCAAAATCCTACCTTTCGATCTGAACCGACTGCCGCCGGTGGACGACTACGACGATCTTACCGCCGATGACTTTAAAGACACCGCCTTGTGCCTCTG 647 0.5193 MRRGRAAADPTAAKATDQDSNNAAKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAARSFRGPKAKTNFPLSNPESGMSQIPLYQRDFDDNHNGFSKFDQVHVNRPTTSSMSSTVESFSGPRVSNPIPSIPRAHRRPVNPVPIEDCHSDCDSSSSVIDDEDCVLTSSFRKILPFDLNRLPPVDDYDDLTADDFKDTALCL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00709 215 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Bva12g00709 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 190 - -
Bva12g00709 215 MobiDBLite consensus disorder prediction 122 139 - -
Bva12g00709 215 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Bva12g00709 215 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Bva12g00709 215 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Bva12g00709 215 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Bva12g00709 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 20 190 - -
Bva12g00709 215 MobiDBLite consensus disorder prediction 1 27 - -
Bva12g00709 215 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Bva12g00709 215 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Bva12g00709 215 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Bva12g00709 215 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00709 Bva-Chr12 8637781 8639105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00709 1 215 AP2-EREBP Transcription Factor Family AT1G50640 49.789 1.23e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva12g00709 AP2 3.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00709 K09286 - pvy:116120303 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00709 12 8637781 8639105 Bva12g02708 12 19808069 19809449 BWGD