Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00708 ATGCCAGAAAACCGGCAGGTTCAGAAGAATGCTGGTTCTGATCAATCCGGGGACAACATTGAAGAAGCCATTCGGCGACTGAAAATCAATGATAATAGGGACAGAGAAGCTGCTGCTCAATCAACCCTGTTCCCAGATCGACCTGGTGAACCCGATTGCTTATATTACTTGAGGACTGGGTCGTGTGGTTATGGGAGTAACTGCCGTTATAATCACCCTGCACACGTTTCATTTGGTGCTCAATATGGTGATGATCTCCCTGAGAGGATTGGACAACCAGATTGCGGGTATTTTCTTAAGACGGGAACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAGGGACAGACGAGGTGCTAGTCCTGTATCCTTTAATGTTCTAGGTCTTCCCATGCGACAGGAAGAAAAATCATGTCCATATTACATGCGAACTGGGGCTTGTAAGTTTGGAGTTGCATGCAAGTTTAATCATCCACAGCCAGCCTCTGTGGAAACTGCCCCAGTTACTGGATCTCCTGCCTCGGCAATTATTCCTTCATCTGGTTTACCATATGTAGGTGGGCTTCCTGCGTGGTCATTACCAAGAATGCCATATTTACAGGGACTTCAATCTTATGTGCCTACTATTCTGCCTACTTCACAAGGCTATGCACAGGGCTGGAATACTTACATGGGAAGTATAAACCCTGCAGTGTCTGCCAATTTTATTGGATCTAATCTTCTTTACAACTCCATGAATCTGGGGGAGCCGATTTCTAGTGGGCaggttaatttattttcaacaattcCAGCTCTCCCCGAGAGACCTGACCAACCAGAATGCCGATACTTTATGAGCACTGGGACCTGCAAATTTGGACCTGATTGCAAGTTTCACCACCCAAAAGAAAGAGTTGCCCAAGTGATTAATCCACTTGGCCTTCCCATGAGACCTGGGCAAGCTATATGTTCTTCCTACAAAATCTATGGCATATGCAAGTATGGTCCAACGTGCAAATTTGATCATCCAGTTCTGGCAATCCACCAAAACTATAGCTTGCATGTTCCTGCTATGCCTCTGCTTGGTGAATCTGTCATAAACAATCCAAGAAGCTTGTCAAGGCCATCTGAGACATCTCAGCCTAAATCATCAAAATTACCTGACTGGGTTCCCCAATCTGATTCCTCAAGTGACAAGATTGAAAACACTGATACAAAAGCTATAGAAGATACATCAAAACAAGCTGATGCTACACCGAATCCCGTTCCAGCCTCGTCAGAGTCTGCACAGGATTA 1280 0.443 MPENRQVQKNAGSDQSGDNIEEAIRRLKINDNRDREAAAQSTLFPDRPGEPDCLYYLRTGSCGYGSNCRYNHPAHVSFGAQYGDDLPERIGQPDCGYFLKTGTCKYGSTCKYHHPRDRRGASPVSFNVLGLPMRQEEKSCPYYMRTGACKFGVACKFNHPQPASVETAPVTGSPASAIIPSSGLPYVGGLPAWSLPRMPYLQGLQSYVPTILPTSQGYAQGWNTYMGSINPAVSANFIGSNLLYNSMNLGEPISSGQVNLFSTIPALPERPDQPECRYFMSTGTCKFGPDCKFHHPKERVAQVINPLGLPMRPGQAICSSYKIYGICKYGPTCKFDHPVLAIHQNYSLHVPAMPLLGESVINNPRSLSRPSETSQPKSSKLPDWVPQSDSSSDKIENTDTKAIEDTSKQADATPNPVPASSESAQD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00708 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Bva12g00708 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Bva12g00708 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 314 338 IPR000571 GO:0046872
Bva12g00708 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Bva12g00708 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Bva12g00708 426 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Bva12g00708 426 Gene3D - 11 83 - -
Bva12g00708 426 MobiDBLite consensus disorder prediction 407 426 - -
Bva12g00708 426 ProSiteProfiles Zinc finger C3H1-type profile. 312 340 IPR000571 GO:0046872
Bva12g00708 426 SUPERFAMILY CCCH zinc finger 273 299 IPR036855 GO:0046872
Bva12g00708 426 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Bva12g00708 426 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Bva12g00708 426 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Bva12g00708 426 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Bva12g00708 426 SMART c3hfinal6 312 339 IPR000571 GO:0046872
Bva12g00708 426 Gene3D - 88 174 - -
Bva12g00708 426 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 3 399 - -
Bva12g00708 426 PANTHER PROTEIN PHOSPHATASE RELATED 3 399 - -
Bva12g00708 426 Gene3D - 266 341 - -
Bva12g00708 426 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Bva12g00708 426 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Bva12g00708 426 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Bva12g00708 426 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Bva12g00708 426 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g00708 426 MobiDBLite consensus disorder prediction 363 426 - -
Bva12g00708 426 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Bva12g00708 426 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Bva12g00708 426 MobiDBLite consensus disorder prediction 363 393 - -
Bva12g00708 426 MobiDBLite consensus disorder prediction 1 17 - -
Bva12g00708 426 SUPERFAMILY CCCH zinc finger 310 338 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00708 Bva-Chr12 8630905 8635352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00708 1 412 C3H Transcription Factor Family AT1G04990 45.199 1.50e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva12g00708 zf-CCCH 2.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00708 - - vra:106765262 602.053