Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00707 atggaGAAAGTACCTAGTATCGAAGAAGCTGTTGAGACATCTCCTTTGCCTTTGCCTTTGCCTTTGCCTTTGCCATCTCCTGCTGTACCACCGAGTGTTGAGCCAGAACTGGTGGTCCCTGTTAAGCATTCTATTATCCATAGGCGTGGGGTTGGGACTACAGGGGAACGAATATCATTGCTTGCCAATCACTTCAAAGTTTCCGTTAACAATCCAGATGCAGTGTTTTTCCAGTATAGTGTCATTATCACTTCAGAAGATAACAGAGCTGTTGAAAGCAAGGGCATTGGCAGAAAACTGATTGATAAGCTTTACCAAACATATACTTCAGAACTTGGTGACAAAAGATTTGCCTATGATGGAGAGAGAACTTTGTACACAGTTGGTCCTTTGCCACAAAAAAAGTCTGAATTCACAGTTTTGCTTGAGGAGTCCTTTGCTAAAAGTTCTGATTGTCATGGTGATGATGGAAACCGTAGTGGCGCAACCAAGAGATCAAAACGTTCTCTTCAGTCAAAGACTTTCAAGGTAGAGATAAGCTTTGCTGCAAAAATACCCCTGAAGTCCATCGCTCTTGTACTCAAAGGAACCCAGTCAGATGAAAATGCTCAGGATGCTTTGAGAGTCCTTGATATCATATTGAGGCAGCAAGCAGCTAGCAGGGGTTGTCTCTTGGTAAGGCAATCATTTTTTCATGATGACCCAAGGAACTTCACTGATGTTGGGGGTGGAGTAACAGGTGTTCGAGGTTTTCATTCCAGCTTCCGTCCAACACAGGGTGGATTATCTCTTAATATGGATGTGTCCACAACAATGATCTTAAGACCTGGACCTGTAATTGACTTTCTACTAGCCAACCAGAATGTGCGGGAACCCCGATTTATTGACTGGCAAAAGGCCAAAAGAATGCTGAAAAACTTAAGGGTGAAAACCACACATAGTAACAtggaatttagaatttttggcTTAAGTGAGAAACCTTGCAATCAGCAACATTTtaccatgaaaagaaaaaatggtgaCAGCAATGATGGAGGGCAGACAGTGGATATTACTGTTTATGAGTATTTTGCTCAACACTGTGGCATAAACCTGACCTATTCCTCATATTTTCCTTGCCTTGATGTTGGGAAGCCAAAACGGCCCAACTATCTCCCTTTGGAGCTCTGTTCACTTATTTCCCTCCAGCGCTATACAAAGGCATTATCTCCACTGCAAAGGGCATCTTTAGTTGAAAAATCAAGGCAAAAGCCTCTGGATAGAATCAAAACTCTTAAAAATGCTATGGGAACTTATCGGTATGATCATGACCCTATACTCGCGGAGTGTGGCATTTCTATTGAGAAACAGTTGACTCAGGTTGAAGGTCGAGTTCTTGAGACTCCAAAGTTAAAGGTTGGTAAGAATGATGACTGCTTCCCTCGAAATGGAAGGTGGAACTTTAACAACAAGACGCTTTTGCAACCAACTCAAATTGATGTCTGGGTGATTGTCAACTTTTCTGCTCAATGTGATATTGCTTACATTTCAAGGGAAATCATCAAATGTGGAATGAACAAGGGAATTaaaattgAACGTCCGTGTACATTAATTGAAGAAGATCAACATATGAAAAGATCTAGCTCTGTTGCAAGGGTTGAAAGGATGTTTGAGCAGCTTTTTTCAAAGGTTTCAGATCAACCACAACTAATTCTGTGTGTCTTgccagagagaaaaaattgtgACATTTATGggccttggaagaaaaaatgtcTTAGTGAAGTTGGTGTTGTCACACAATGTATTTCCCCTTCTAGGAAGATCAACAATCAATATCTTACAAATGTACttctcaaaatcaattctaaGCTAGGAGGAATAAATTCCTTACTAGCCATAGAGCATTCTAGGTGTATTCCCCTGATTAAAGATGCTCCAACTATGATTTTGGGAATGGATGTGTCCCATGGTTCTCCTGGTCGGTCAGATATCCCATCAATAGCAGCGGTTGTTGGATCTCGTTGTTGGCCACTCATTTCAAGGTATAGAGCATCTGTGAGAGCTCAATCTTCTAAGGTGGAGATGATTGAAGCATTGTATAAGCCTTTGGCAAATGGGAATGATGATGGTATCATCAgGGAACTTCTTTTGGATTTCTACAGTTCAAGTGATGGACGCAAACCAACTCAAATTATTGTCTTCAGggaTGGAGTCAGTGAATCACAATTCAGCCAGGTCTTGAATATTGAGCTGGACCAGATAATTAAGGCCTATCAAAATCTTGGAGAGGTTGATCTTCCCAAGTTTACTGTAATTGTAGCGCAGAAGAATCACCATACTAAACTGTTTCAAGCTAATGGTCCAGAAAATGTCCCTCCTGGGACTGTTGTTGACACAAAGATTGTGCACCCAAGGAACTATGATTTCTACATGTGTGCCCATGCAGGGATGATtGGGACTTCTAGGCCGGTACATTATCATGTGTTGCTTGACGAAATTGGTTTCTCACCAGATGACTTGCAAAACCTAGTCCACTCACTGTCTTACGTGTATCAAAGGAGTACAACTGCAATCTCACTTGTGGCACCCATATGCTATGCCCACCTTGCTGCTGCTCAGGTGGGGCAATTTTTgaagttcgatgattcatcAGAAGGATCTTCAAGCTTGACCTCAGCCGGAGACGTCCCAGTCCCAGAGCTCCCTAGGTTGGTCAAGGAGGTCCACAGTAGTATGTTCTTCTGTTA 2726 0.4017 MEKVPSIEEAVETSPLPLPLPLPLPSPAVPPSVEPELVVPVKHSIIHRRGVGTTGERISLLANHFKVSVNNPDAVFFQYSVIITSEDNRAVESKGIGRKLIDKLYQTYTSELGDKRFAYDGERTLYTVGPLPQKKSEFTVLLEESFAKSSDCHGDDGNRSGATKRSKRSLQSKTFKVEISFAAKIPLKSIALVLKGTQSDENAQDALRVLDIILRQQAASRGCLLVRQSFFHDDPRNFTDVGGGVTGVRGFHSSFRPTQGGLSLNMDVSTTMILRPGPVIDFLLANQNVREPRFIDWQKAKRMLKNLRVKTTHSNMEFRIFGLSEKPCNQQHFTMKRKNGDSNDGGQTVDITVYEYFAQHCGINLTYSSYFPCLDVGKPKRPNYLPLELCSLISLQRYTKALSPLQRASLVEKSRQKPLDRIKTLKNAMGTYRYDHDPILAECGISIEKQLTQVEGRVLETPKLKVGKNDDCFPRNGRWNFNNKTLLQPTQIDVWVIVNFSAQCDIAYISREIIKCGMNKGIKIERPCTLIEEDQHMKRSSSVARVERMFEQLFSKVSDQPQLILCVLPERKNCDIYGPWKKKCLSEVGVVTQCISPSRKINNQYLTNVLLKINSKLGGINSLLAIEHSRCIPLIKDAPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRAQSSKVEMIEALYKPLANGNDDGIIRELLLDFYSSSDGRKPTQIIVFRDGVSESQFSQVLNIELDQIIKAYQNLGEVDLPKFTVIVAQKNHHTKLFQANGPENVPPGTVVDTKIVHPRNYDFYMCAHAGMIGTSRPVHYHVLLDEIGFSPDDLQNLVHSLSYVYQRSTTAISLVAPICYAHLAAAQVGQFLKFDDSSEGSSSLTSAGDVPVPELPRLVKEVHSSMFFC 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00707 908 ProSiteProfiles PAZ domain profile. 301 394 IPR003100 GO:0005515
Bva12g00707 908 CDD Piwi_ago-like 438 866 IPR045246 -
Bva12g00707 908 SUPERFAMILY PAZ domain 271 434 IPR036085 GO:0005515
Bva12g00707 908 Pfam Argonaute linker 2 domain 421 465 IPR032472 -
Bva12g00707 908 SMART DUF1785_2 224 276 IPR014811 -
Bva12g00707 908 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 38 907 - -
Bva12g00707 908 CDD PAZ_argonaute_like 276 393 - -
Bva12g00707 908 Pfam Argonaute linker 1 domain 226 273 IPR014811 -
Bva12g00707 908 Gene3D - 458 625 - -
Bva12g00707 908 Gene3D - 631 908 IPR036397 GO:0003676
Bva12g00707 908 SMART PAZ_2_a_3 277 416 IPR003100 GO:0005515
Bva12g00707 908 Pfam PAZ domain 280 410 IPR003100 GO:0005515
Bva12g00707 908 Gene3D paz domain 270 398 - -
Bva12g00707 908 PANTHER PROTEIN ARGONAUTE 6 38 907 - -
Bva12g00707 908 Pfam Piwi domain 563 872 IPR003165 GO:0003676
Bva12g00707 908 SMART Piwi_a_2 563 872 IPR003165 GO:0003676
Bva12g00707 908 Pfam N-terminal domain of argonaute 57 214 IPR032474 -
Bva12g00707 908 SUPERFAMILY Ribonuclease H-like 547 870 IPR012337 -
Bva12g00707 908 ProSiteProfiles Piwi domain profile. 563 872 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00707 Bva-Chr12 8618803 8626911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00707 12 908 Eukaryotic Initiation Factors Gene Family AT1G48410 36.726 6.08e-171 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00707 K11593 - pop:7455965 1355.12