Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00705 ATGGCAACCAGCTTCGAACTTCAAATCTTCCCAATGGAAGAACAACCATCCAATCAAAATCTACTCTTTCCACACTACCAATCTTCAATCCCAATGCCACCTTGTTGTGATTCCTTCAACATCAAGCTTCAATATCTCTATTCCCAGAACCCTTCAAACCCAGTATTCGTGGAGGATCAGTTCTTGTTTCCCCGTGATCTCTTCTGCGACATGGGCGTCAACCTCTTGGACGACACATTCTCCTACATGCACATTCCCTCTGAGCTGCTGCACCAGGTTGCCCCTCAAGTCGTTTCTTTTGCAAGAAACATGGTCTCAAACGACAACTACAAAGGGCGTCATACGTTGAACATTGCTGTAAAGATTCATGTGACCAATTATGCATCCAGTGCTCCAAGTGATAGTGATGATAGTTGCCGGTCCAGGGAAAGCTTTGTTAAGGAAGTTAGAGTTGACGATGATGATGCTTCTTGCTGCAGTATCTGTTTGGACAAGTTCTGTGATCGGACGTCGGAGGTTGTCGGAACGCCGTGCTCGCATGTTTTCTACCGAGACTGTATTCTGCGGTGGCTCAAGGATCATTCGTCTTGCCCAATGTGCCGCTACCAAGTTCCTTG 617 0.4668 MATSFELQIFPMEEQPSNQNLLFPHYQSSIPMPPCCDSFNIKLQYLYSQNPSNPVFVEDQFLFPRDLFCDMGVNLLDDTFSYMHIPSELLHQVAPQVVSFARNMVSNDNYKGRHTLNIAVKIHVTNYASSAPSDSDDSCRSRESFVKEVRVDDDDASCCSICLDKFCDRTSEVVGTPCSHVFYRDCILRWLKDHSSCPMCRYQVP 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00705 205 Pfam Ring finger domain 159 201 IPR001841 -
Bva12g00705 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 202 - -
Bva12g00705 205 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Bva12g00705 205 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 116 202 - -
Bva12g00705 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 205 IPR013083 -
Bva12g00705 205 SUPERFAMILY RING/U-box 151 204 - -
Bva12g00705 205 SMART ring_2 159 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00705 Bva-Chr12 8614874 8615491 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00705 147 204 C3H Transcription Factor Family AT1G80400 44.828 1.43e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00705 - K11982 csin:114257218 76.6405