Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00701 ATGAAAGTGGCTGAACTCCAACTCCAACTTCATCTTCAGCAGCACAAGCACCACAGGGAAAGGGAAGAGACCCAATTGTGCAGGAAGCTCCGAATGGGTGTTGCCGACCTCTCTCTGCCGATTTCCTCCGCTGTTGATGTCTGTGATAAAGTCGAAGGGGAGGATCTCTTCGTCCCGCCCCTCAATTTTGCTATGGTGGATAATGGCATTTTCAGGTCTGGATTCCCTGAACCTGCTAACTTCGCCTTCCTGCAGACCCTTGGCCTCCGCTCCATCATATATCTATGTCCTGAGCCATATCCTGATACCAACATGGAGTTTTTGAAGTCAAATGGGATCAAGCTATATCAATTTGGGATTGAAGGTCACAAGGAGCCCTTTGTAAACATCCCAGATGACGCAATCCGTGAAGCGCTGAAGATTCTCCTTGaTGTCAGGAACCACCCAGTTTTGATTCACTGTAAACGGGGGAAGCACCGGACAGGTTGCCTTGTAGGATGCTTGAGGAAATTGCAAAAGTGGTGCTTGTCATCTGTGTTTGATGAGTACCAGAGGTTTGCAGCTGCCAAAGCAAGAGTTTCAGACCAGAGATTTGTGGAGTTGTTTGATATTTCCAGCCTGAAGCACTTGCcaattccattttcttcttccaagAGGTA 659 0.4643 MKVAELQLQLHLQQHKHHREREETQLCRKLRMGVADLSLPISSAVDVCDKVEGEDLFVPPLNFAMVDNGIFRSGFPEPANFAFLQTLGLRSIIYLCPEPYPDTNMEFLKSNGIKLYQFGIEGHKEPFVNIPDDAIREALKILLDVRNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSLKHLPIPFSSSKR 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00701 219 Gene3D Protein tyrosine phosphatase superfamily 56 206 IPR029021 -
Bva12g00701 219 Pfam Tyrosine phosphatase family 58 209 IPR004861 -
Bva12g00701 219 PRINTS Plant and fungal dual specificity phosphatase signature 113 127 IPR020428 GO:0016791
Bva12g00701 219 PRINTS Plant and fungal dual specificity phosphatase signature 57 74 IPR020428 GO:0016791
Bva12g00701 219 PRINTS Plant and fungal dual specificity phosphatase signature 130 144 IPR020428 GO:0016791
Bva12g00701 219 PRINTS Plant and fungal dual specificity phosphatase signature 94 107 IPR020428 GO:0016791
Bva12g00701 219 PANTHER - 43 217 - -
Bva12g00701 219 ProSiteProfiles Dual specificity protein phosphatase domain profile. 62 216 IPR020422 GO:0006470|GO:0008138
Bva12g00701 219 CDD PFA-DSP_Siw14 56 203 - -
Bva12g00701 219 ProSitePatterns Tyrosine specific protein phosphatases active site. 152 162 IPR016130 GO:0016311|GO:0016791
Bva12g00701 219 PANTHER TYROSINE-PROTEIN PHOSPHATASE 43 217 - -
Bva12g00701 219 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 57 204 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00701 Bva-Chr12 8582040 8585665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00701 53 219 Protein tyrosine phosphatase (PTP) family AT4G03960 78.443 1.04e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00701 K18045 - gmx:100799968 342.428