Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00686 ATGGCAACCAGCTTCCAACTTCAAATCTTCCCAATGGAAGAACAACAACCAAATGAAGATCTATGGTTCCCACAGTATCAAAATCTATGGTTCTCACAGTACCAATCTTCAGTCCCAGTACCACCTTGTTGCGATTCCTTCAACATCAagcttcaatattttaattcccACCCTTCGAACCGAGTATCCGTGGAGGATCAATTCATGTTTCCCCGTGATCTCTTTTGCGACATGGGCGTCAACCTCTTAGTCGACACATTCTCCCTCATGCATATTCCCCCTGAGCTGCTGTACCAGGTTGCCCCTCATGTCGTTTCTTTCGCCAGAAACATGCATGCAGACGACAACTACAAAGGTCGTCGTACGTTGAACATTTCTGTGAGGATTTATGTGAATACACCAAGTGCTCCGAATGGCGATGATGATAGTTGCCGGTCCTGGGGAGGCTTCATTAATTCATTGAAGAAAGTTAGAGTTGGTGATGATGATGCTTCTTGCTGCAGTATCTGTCTGGACAAGTTATGTGATCCGACGTCGGAGGTTGTCGGAACGCCGTGCTCGCACGTTTTCCACCGAGATTGTATTTTGCGGTGGCTCAAGAATCATTCGTCTTGTCCAATGTGCCGCTTCCAAGTCCGTCGTTA 644 0.4565 MATSFQLQIFPMEEQQPNEDLWFPQYQNLWFSQYQSSVPVPPCCDSFNIKLQYFNSHPSNRVSVEDQFMFPRDLFCDMGVNLLVDTFSLMHIPPELLYQVAPHVVSFARNMHADDNYKGRRTLNISVRIYVNTPSAPNGDDDSCRSWGGFINSLKKVRVGDDDASCCSICLDKLCDPTSEVVGTPCSHVFHRDCILRWLKNHSSCPMCRFQVRR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00686 214 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Bva12g00686 214 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 145 210 - -
Bva12g00686 214 SMART ring_2 167 208 IPR001841 -
Bva12g00686 214 Pfam Ring finger domain 167 209 IPR001841 -
Bva12g00686 214 SUPERFAMILY RING/U-box 160 212 - -
Bva12g00686 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 145 210 - -
Bva12g00686 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 213 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00686 Bva-Chr12 8509172 8509816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00686 148 212 C3H Transcription Factor Family AT1G80400 47.761 3.68e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00686 - K11982 tcc:18592345 78.9517