Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00685 ATGCCACCTTGTTGCGATTCCTTCAACATCAAGCTTCAATATTTCTATTCCCAGAACCATTCAGACCCAGTATTCGTCGAGGATCAGTTCTTGTTTCCCCGTGATCTCTTCAGCGACATGGGCGTCAACCTCTTGTGCGACGCATTCTCCTACATGCACATTCCCTCTGAGCTACTGCACCAAGTTGCCCCTCAAGTCGTTTCTTTCGCAAGAAACATGCTCTCAAACGACAACTACAAAGGGCGTCGTACGTTGAACATTGCTGTTAGGATTCATGTGACCAATTATGCACCCAGTGCTCCAAGTGATAGTGATGATGGTTGCCGGTCCAGGGAAAGCTTTGTTAATTCGTTGAAGGAAGTTAGAGTTGACGATGATGATGCTTCTTGCTGCAGTATCTGTTTGGACAAGTTCTGTGATCGGAGGTCGGAGGTTGTCGGAACGCCGTGCTCGCATGTTTTCCACCGAGATTGTATTCTGCGGTGGCTCAAGAATCATTCGTCTTGCCCAATGTGCCGCTACCAAGTTCCTTG 533 0.4803 MPPCCDSFNIKLQYFYSQNHSDPVFVEDQFLFPRDLFSDMGVNLLCDAFSYMHIPSELLHQVAPQVVSFARNMLSNDNYKGRRTLNIAVRIHVTNYAPSAPSDSDDGCRSRESFVNSLKEVRVDDDDASCCSICLDKFCDRRSEVVGTPCSHVFHRDCILRWLKNHSSCPMCRYQVP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00685 177 Pfam Ring finger domain 131 173 IPR001841 -
Bva12g00685 177 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 89 174 - -
Bva12g00685 177 SUPERFAMILY RING/U-box 120 176 - -
Bva12g00685 177 SMART ring_2 131 172 IPR001841 -
Bva12g00685 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 177 IPR013083 -
Bva12g00685 177 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Bva12g00685 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00685 Bva-Chr12 8506569 8507230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00685 114 176 C3H Transcription Factor Family AT1G80400 44.444 6.02e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00685 - K11982 csv:101207369 83.9593