Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00684 ATGGCAACCTGCTTCCAACTTCAAATCTTCCCAATGGAAGAACAACAACCCAATCAAAATCTACCCTTTCCACACTACCAATCTTCAATCCCAATGCCACCTTCTTGCGATTCCTTCAACATCAAGCTTCAATATTTCTATTCCCAGAACCATTCAGACCCAGTATTCGTCGAGGATCAGTTCTTGTTTCCCCGTGATCTCTTCAGCGACATGGGCGTCAACCTCTTGTACGACGCATTCTCCTACATGCACATTCCCTCTGAGCTACTGCACCAAGTTGCCCCTCAAGTCGTTTCTTTCGCAAGAAACATGCTCTCAAACGACAACTACAAAGGGCGTCGTACGTTGAACATTGCTGTTAGGATTCATGTGACCAATTATGCACCCAGTGCTCCAAGTGATAGTGATGATAGTTGCCGGTCCAGGGAAAGCTTTGTTAATTCGTTGAAGGAAGTTAGAGTTGACGATGATGATGCTTCTTGCTGCAGTATCTGTTTGGACAAGTTCTGTGATCGGACGTCGGAGGTTGTCGGAACGCCGTGCTCGCATGTTTTCCACCGAGATTGTATTCTGCGGTGGCTCAAGAATCATTCGTCTTGCCCAATGTGCCGCTACCAAGTTCCTTG 626 0.4681 MATCFQLQIFPMEEQQPNQNLPFPHYQSSIPMPPSCDSFNIKLQYFYSQNHSDPVFVEDQFLFPRDLFSDMGVNLLYDAFSYMHIPSELLHQVAPQVVSFARNMLSNDNYKGRRTLNIAVRIHVTNYAPSAPSDSDDSCRSRESFVNSLKEVRVDDDDASCCSICLDKFCDRTSEVVGTPCSHVFHRDCILRWLKNHSSCPMCRYQVP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00684 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 208 IPR013083 -
Bva12g00684 208 ProSiteProfiles Zinc finger RING-type profile. 162 204 IPR001841 -
Bva12g00684 208 SMART ring_2 162 203 IPR001841 -
Bva12g00684 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 111 205 - -
Bva12g00684 208 SUPERFAMILY RING/U-box 151 207 - -
Bva12g00684 208 Pfam Ring finger domain 162 204 IPR001841 -
Bva12g00684 208 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 111 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00684 Bva-Chr12 8499652 8500278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00684 145 207 C3H Transcription Factor Family AT1G80400 44.444 5.77e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00684 - K11982 csv:101207369 89.3521