Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00650 ATGGAGTATCCTTTGCTTGTAGATAAAATGCAATCAGAAAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGCGACTCGGGGAGTATTTCAGTACCTATGGGGAGGTTGTGGAAGCGGTAATTATGAAGGATCGGACGACAGGTAGAGCCCGTGGATttggttttgttgtttttgcaGACCCAGCTGTTGCAGAGAGAGTCATCAAAGAGAAGCACAACATTGATGGAAGGAtgGTTGAGGCAAAGAAGGCTGTTCCTCGAGATGACCAGAACGTACTGAGTAGAAGCAGTGGTAGTATCCATGGTTCTCCTGGTCCAGGCCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCCACAGTTACAGAAAGTgatttcaaaaaatactttGATCAATTTGGGACTATAACTGATGTTGTAGTGATGTATGATCACAACACTCAGAGGCCTAGAGGCTTTGGATTTATTACTTATGATTCTGAGGAAGCTGTGGACAAAGTCTTACTTAAGACCTTTCATGAACTGAATGGTAAGATGGTTGAGGTCAAGCGGGCTGTTCCTAAAGAGTTATCACCAGGACCAAGCCGCAGCCCACTTGGTGGATATAATTATGGTCTGAATAGGGTGAATAGTTTCCTAAATGGCTTCACTCAAGGATACACTCCAAATAACATTGGAGGCTATGGACTTAGGCTGGATGGTAGGTTCAGTCCTGTTGCCAGTGGTCGAAGTGGTTTTCCTCCATTTGGATCTGGTTATGGAATGAGCGTGAACTTTGAACCTGGTTTGAGCCCTGGATTTGGAGGGAATGCAAATTTCAATAGTAATCTTAGCTATGGCCGGGGAATGAATCCTTATTATATTGGAAGCTCAAACAGGTTCGGTAGTCCAATTGGGTATGACAATGGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGGAATGGTGGTCTTAATTATGGAACTAGCTCAGCAAATTCCAGCGCATACATGGGATCAGGAAGTGGGAATGTTGGAGGAAACACATTTGGCAATGCAGGAGTCAACTGGGGTTCTTCAGCAATCTCTGGTCAAAGTGGAGGAAACAATGTGTCACAGAATAGCAGCAACCTTGGCTATGGAGGTGGTGACAACAGTTATGGATTGGGAACTGGAGGTTATGGAAGAAGCAGTGGTACCAGTATTGCCCCAGCATCATCATACTCTGCATCAAATGGTTTTGATGGGGCTTTTGCTGATTTTTACAATAGTAGTTCAGCTTATGGGGACCCAACTTGGCAGCCTTCAAATTCTGAGCGGGATGGATCTGGTCCCTTTGGTTATGGGCTTGGCAGTGCAGCTTCAGATGTTTCAGCCAAAGCTTCTCCTGGTTATGTTGGTGGATATACTGTTAATAAGAGACAGCCAAATAGGGGAATCAGTACATA 1460 0.4322 MEYPLLVDKMQSENGKLFIGGISWDTNEERLGEYFSTYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKEKHNIDGRMVEAKKAVPRDDQNVLSRSSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYNYGLNRVNSFLNGFTQGYTPNNIGGYGLRLDGRFSPVASGRSGFPPFGSGYGMSVNFEPGLSPGFGGNANFNSNLSYGRGMNPYYIGSSNRFGSPIGYDNGNGGNNSFFSSVTRNLWGNGGLNYGTSSANSSAYMGSGSGNVGGNTFGNAGVNWGSSAISGQSGGNNVSQNSSNLGYGGGDNSYGLGTGGYGRSSGTSIAPASSYSASNGFDGAFADFYNSSSAYGDPTWQPSNSERDGSGPFGYGLGSAASDVSAKASPGYVGGYTVNKRQPNRGIST 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00650 486 Gene3D - 13 97 IPR012677 -
Bva12g00650 486 SMART rrm1_1 116 188 IPR000504 GO:0003723
Bva12g00650 486 SMART rrm1_1 16 87 IPR000504 GO:0003723
Bva12g00650 486 MobiDBLite consensus disorder prediction 433 453 - -
Bva12g00650 486 CDD RRM2_DAZAP1 113 192 IPR034131 GO:0003723
Bva12g00650 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 78 IPR000504 GO:0003723
Bva12g00650 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 174 IPR000504 GO:0003723
Bva12g00650 486 CDD RRM1_hnRNPA_hnRNPD_like 17 87 - -
Bva12g00650 486 MobiDBLite consensus disorder prediction 465 486 - -
Bva12g00650 486 SUPERFAMILY RNA-binding domain, RBD 8 114 IPR035979 GO:0003676
Bva12g00650 486 Gene3D - 112 198 IPR012677 -
Bva12g00650 486 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 485 - -
Bva12g00650 486 SUPERFAMILY RNA-binding domain, RBD 114 202 IPR035979 GO:0003676
Bva12g00650 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Bva12g00650 486 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 10 485 - -
Bva12g00650 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00650 Bva-Chr12 8267408 8271605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00650 8 308 Eukaryotic Initiation Factors Gene Family AT1G71770 26.934 1.55e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00650 K14411 - gmx:100795907 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00650 12 8267408 8271605 Bva12g02662 12 19569594 19573475 BWGD