Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00640 ATGTCTGTCAATGGAAAGCTCTCTGGCTTAAATGGCAGGTTGCCACTAAgtttgaagtcttggaaggcAAATGAGCCTTTACACGGGTCGAAATCTCTCAGGAAATGCAGGAGAAAGTCCTTGTTTTGGTGGGCTTTTGGTTTTATTGCTATAATAAGCGTATGCTTTTTCTTCAGTTTCAATAATGAATCTTTGGCAAGGAAAGAGAAGGTTTGGGATGCTTGTGAGGAGAGAGGTCGAAGCTTGCTGCAACGTCAGAATGTAAGCAGAAAGAGATTTCATGCTTTGGCTTCTCTACTCTATGGATCAGATCAGTGTATTGATGAAGGTGGACTACAAAAGCTGTTAAGCAATGGTATAGACAGTTCACAAGTAATATGTCTAGAGAAGCAGTTCTCAAAGGATCATCCACGTGTTGCTGACAATGTAGAATCTGTAGAGCAATGCCCAGTCCTTGATGAATATGTACAGACAAATCTTGAGTTGTCAGTGTTAGTGGACAAGTCCATATCAATGGCCGCACGGTCTGAACATTCATCCAATTTTGTTAATCATTTGTTCTATGGAAAGAACATGTTGCAGTCCTGGGTACTGGGGATCTTTGCAATTCCAAGTTTTGGGAGTCTGTCTAATTTGATTAAAGGAAGTTGGTGGTTCCTTCTTGGACTTTCAATGTGCTACAAATTGTCTGgtttccatttattttggaAGACACAAAATCAGAAGGGGGTGCAATGGAAGCCAGTTGCTCAGCAGAAGAAGCTACAACAACATTGTGTCCATGGTTCTCCACGGGGTGCTGGAAAGTGGAGGAAaatgttcttaattttatttgtgtcaTTTGGAATACTTGGGTCCATTTGGTTATTCTGGCACTTAAATAATGACATTAAgctgagaagaaaagaaatgcttGCCAATATGTGTGATGAGCGAGCCCGGATGCTGCAGGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTTTGGCTGTTCTTGTATCTACCTTTCACCACAGTAAACATCCTTCCACAATTGATCAGAAAACATTTGGAGAGTATACAGAGAGGACGGCTTTTGAGAGACCTCTTACTAGTGGTGTTGCGTATGCTCTGAAAGTTCCTCACTCAGTTAGGGAGCAATTTGAGAAGGGGCATGGATGGacaattaagaaaatggaaactGAGAATGAGACACTTGTCCAAGATTGTATTCCAGAATATTTGGATCCTGCACCCATTCAAGATGAATATGCACCAGTCATATTTGCTCAAGAAACTGTTTCCCATATTGTATCAATTGATATGATGTCAGGAAAGGATGACCATGAGAATATCTTGCGAGCAAGGGCATCTGGAAAGGGAGCGCTGACATCTCCTTTTAAACTGCTAAAGTCCAATCATTTGGGCGTTGTACTTACATTTGCTGTTTATAACACTGATCTTCCTCCAGATGCTACACCAGAGCAGCGAATTGAAGCTACTGTCGgATATTTGGGTGCATCCTATGATGTTCCATCACTAGTGGACAAGCTTCTGCACCAACTTGCCAGAAAGCAAACAATTGTTGTAAATGTTTATGATACAACTAATGCATCTGCACCTATCACCATGTATGGCACTGATGTTGCTGATACTGGCCTACTGTATGTTAGCAACCTAGATTTTGGGGATCCACTACGAAAACATGAGATGCATTGCAGgTTCAAGGAGAGACCTCCATTACCTTGGACAGCAATCAATGCATCAGTGGGAGTATTTGTTATCACTTTGCTTCTTGGCCATATTTTTTATGCTGCAATTAATAGGATAGCAAAAGTGGAGGATGATTACCGTAAAATGATGGAGCTTAAAGTTCTTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCTACGGTTTCACATGAGATCAGGACTCCATTGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAACTTGATGAAAACCAGATGGATTTTGCCGAGACTGCTCACGGTAGTGGTAAAGATCTAATATCAGTAATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCTGGCAAGCTTGAACTTGAAGCTGTAACTTTTGATCCACGTGCTATTTTAGATGAAGTTCTGTCACTTTTCTCAGGAAAATCTAGTGAGAAAAGAATTGAGTTGGCTGTTTATGTATCCAATCAAGTGCCTGAAGCTGTCATCGGTGATCCTAAACGATTCCGGCAAACAATTACTAATCTTGTTGGGAATTCACTTAAGTTCACTCATGACAAAGGACATGTATTTGTCTCAATTCATCTAGCGGACGAAGTAAGGAGCCCGCTTTATATCATGGATTCAGTGCTGAGGCAAGGTTTTAACCTGGATCAGAACATGCCACACAGAAGTTATAATACACTGAGTGGGTTTCCTGTAGTCAACAGATGGAAAAGCtgggaaaatttcaaaaagctAAGCAGCATAAATTTGATAGATGATCCTGAAATTATTCAGTTATTAGTAACAGTTGAGGATACCGGTATAGGAATTCCGGTGGATGCACAAAGCCGGATATTCACGCCTTTTATGCAGGCTGATAGTTCCACCTCACGAACCTATGGTGGGACTGGAATAGGACTGAGCATTAGTAGATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAACCTGGTATTGGTAGCACTTTTACATTCACTGGAATCTTCAGAAAAGGAGAAACTGCATCTCTGGATTCCAAATGGCAGCAGTACTCTCCTTTCATCTCAGAGTTTGAAGGATTGAGAGCACTAGTGGTAGATAGAAGAAATATTCGAGCTGAGGTGACAAAATATTATCTGCAGAGGTTGGGGATGTCTGTTGATGTAACTTCTAGTCTGAAATCAGCATACTCTTATCTATCTAGTATGAAGAGaatGCCTACACAATTGACCATGATGCTTTTAGAGAAGGATGTTTGGGATAAGGAATGCAGCATATTATGTTCCATCAAGAAACATGGGCAGAATGGCATGAAAGAAGACCTAGTAAATTTTCCCAAGATTTTTCTCTTGGCCACCCACCTTAGTCCCGATGAACATGACAAGCTAAAATGTGCTGGTGTTGTAGATGATGTCCTGATAAAACCTCTTTGGCTTGATGTTGTGATTCGCTACCACAGAGAAACCCTTGGAAGTGAGAAAAGgcaaatatatagaaagacAGCATCAAATCTGGGGAACATGTTAATgcagaaaagaattttggtgGTTGATGACAATGCAGTAAATAGAAAAGTTGCAGAAGGCTTTCTGCAGAAATATGGGGCAATTGTTACCTGCGTGAATGGTGGCAAGGCTGCTTTAAAGATGCTTAATCCACCACATAGTTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCTTCACAGCAAGTCCGCATTCTGGAGAATGAGGTAAATGAGAAAATTGCATGTGGCAAAGCATCAGCTGAGATGTTTGACAATGTCGCTTATTGGCACACACCAGTATTAGCTATGACAGCTGATGTGATTCAGGCTATAAATGAGGAATGCAGTAAGTGTGGAATGGATGATTATGTGGCAAAGCCATTTGAAGAAGAACAGCTCTATACAGCCATGGCCCGTGTCTTCAAGTTCAATCCATA 3683 0.3953 MSVNGKLSGLNGRLPLSLKSWKANEPLHGSKSLRKCRRKSLFWWAFGFIAIISVCFFFSFNNESLARKEKVWDACEERGRSLLQRQNVSRKRFHALASLLYGSDQCIDEGGLQKLLSNGIDSSQVICLEKQFSKDHPRVADNVESVEQCPVLDEYVQTNLELSVLVDKSISMAARSEHSSNFVNHLFYGKNMLQSWVLGIFAIPSFGSLSNLIKGSWWFLLGLSMCYKLSGFHLFWKTQNQKGVQWKPVAQQKKLQQHCVHGSPRGAGKWRKMFLILFVSFGILGSIWLFWHLNNDIKLRRKEMLANMCDERARMLQDQFNVSMNHVHALAVLVSTFHHSKHPSTIDQKTFGEYTERTAFERPLTSGVAYALKVPHSVREQFEKGHGWTIKKMETENETLVQDCIPEYLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKDDHENILRARASGKGALTSPFKLLKSNHLGVVLTFAVYNTDLPPDATPEQRIEATVGYLGASYDVPSLVDKLLHQLARKQTIVVNVYDTTNASAPITMYGTDVADTGLLYVSNLDFGDPLRKHEMHCRFKERPPLPWTAINASVGVFVITLLLGHIFYAAINRIAKVEDDYRKMMELKVLAEAADVAKSQFLATVSHEIRTPLNGVLGMLQMLMDTELDENQMDFAETAHGSGKDLISVINEVLDQAKIEAGKLELEAVTFDPRAILDEVLSLFSGKSSEKRIELAVYVSNQVPEAVIGDPKRFRQTITNLVGNSLKFTHDKGHVFVSIHLADEVRSPLYIMDSVLRQGFNLDQNMPHRSYNTLSGFPVVNRWKSWENFKKLSSINLIDDPEIIQLLVTVEDTGIGIPVDAQSRIFTPFMQADSSTSRTYGGTGIGLSISRCLVDLMGGEIGFVSEPGIGSTFTFTGIFRKGETASLDSKWQQYSPFISEFEGLRALVVDRRNIRAEVTKYYLQRLGMSVDVTSSLKSAYSYLSSMKRMPTQLTMMLLEKDVWDKECSILCSIKKHGQNGMKEDLVNFPKIFLLATHLSPDEHDKLKCAGVVDDVLIKPLWLDVVIRYHRETLGSEKRQIYRKTASNLGNMLMQKRILVVDDNAVNRKVAEGFLQKYGAIVTCVNGGKAALKMLNPPHSFDACFMDLQMPEMDGFEASQQVRILENEVNEKIACGKASAEMFDNVAYWHTPVLAMTADVIQAINEECSKCGMDDYVAKPFEEEQLYTAMARVFKFNP 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00640 1227 ProSiteProfiles CHASE domain profile. 342 566 IPR006189 -
Bva12g00640 1227 Gene3D - 293 345 - -
Bva12g00640 1227 Gene3D - 61 102 - -
Bva12g00640 1227 PRINTS Bacterial sensor protein C-terminal signature 836 850 IPR004358 GO:0016310|GO:0016772
Bva12g00640 1227 PRINTS Bacterial sensor protein C-terminal signature 895 908 IPR004358 GO:0016310|GO:0016772
Bva12g00640 1227 PRINTS Bacterial sensor protein C-terminal signature 871 889 IPR004358 GO:0016310|GO:0016772
Bva12g00640 1227 PRINTS Bacterial sensor protein C-terminal signature 854 864 IPR004358 GO:0016310|GO:0016772
Bva12g00640 1227 SMART HKATPase_4 739 911 IPR003594 -
Bva12g00640 1227 SMART CHASE_2 342 541 IPR006189 -
Bva12g00640 1227 CDD REC_hyHK_CKI1_RcsC-like 1087 1219 - -
Bva12g00640 1227 SMART HisKA_10 627 692 IPR003661 GO:0000155|GO:0007165
Bva12g00640 1227 CDD HATPase_EvgS-ArcB-TorS-like 744 906 - -
Bva12g00640 1227 CDD HisKA 627 688 IPR003661 GO:0000155|GO:0007165
Bva12g00640 1227 SMART REC_2 1085 1219 IPR001789 GO:0000160
Bva12g00640 1227 Gene3D - 691 910 IPR036890 -
Bva12g00640 1227 SUPERFAMILY CheY-like 1085 1223 IPR011006 -
Bva12g00640 1227 Pfam Response regulator receiver domain 1087 1158 IPR001789 GO:0000160
Bva12g00640 1227 Gene3D - 1080 1226 - -
Bva12g00640 1227 ProSiteProfiles Response regulatory domain profile. 1086 1223 IPR001789 GO:0000160
Bva12g00640 1227 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 739 906 IPR003594 -
Bva12g00640 1227 Gene3D CHASE domain 346 573 IPR042240 -
Bva12g00640 1227 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 681 906 IPR036890 -
Bva12g00640 1227 PANTHER HISTIDINE KINASE 2 256 1224 - -
Bva12g00640 1227 Pfam His Kinase A (phospho-acceptor) domain 627 692 IPR003661 GO:0000155|GO:0007165
Bva12g00640 1227 PANTHER TWO-COMPONENT HISTIDINE KINASE 256 1224 - -
Bva12g00640 1227 SUPERFAMILY CheY-like 930 1061 IPR011006 -
Bva12g00640 1227 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 621 693 IPR036097 GO:0000155|GO:0007165
Bva12g00640 1227 ProSiteProfiles Histidine kinase domain profile. 634 911 IPR005467 -
Bva12g00640 1227 Pfam CHASE domain 345 539 IPR006189 -
Bva12g00640 1227 Gene3D - 598 690 - -
Bva12g00640 1227 ProSiteProfiles Response regulatory domain profile. 935 1063 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00640 Bva-Chr12 8219907 8231984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00640 209 1224 Miscellaneous Gene Families AT5G35750 65.029 0.0 1343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva12g00640 CHASE 2.2e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00640 K14489 - gmx:100805107 1782.69