Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00638 ATGCTCCCTCCACGGCAGCAATCACGGGTTGGAGGACTACAAACATCACTGTCTCTAGTTTCTTCAGATCCTCGCCTCTCTCCTGAGGAACCTAGATCAAACTCTGACAATAATCGTGACTCTCCTACAGAAAGTGCCAGTTCTCGAGAAACATGGCCTACTGCTGATGCAATTGCAGCAAAGAAGATGGAGAACGGGAAAGCTGAGAATGATGGTATGGAGCAATCAGTTATTCGTCGTGTTTCTTGTGCAGATAAGATTACTCTTCAGGACATAGCAAGAGAAAGAGTTGATATGATTTCTGAAAAGATGGAGCATCTACCTGAAGAATTTTTAGAAGAGCTGAAGAATGGACTTCGAGTTATCCTTGAGGGAGGCAACGGTTCACAGCATAGGGAggagttttttattttgcagaaACTTGTTCAAAGTAGAACTGATTTAACAGCCAAAACATTGTTGAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCAATAAACACTGGAATTCTGGGATTTATGCATCCAAGTATCAGTCTGTCACAAAATTCCCTGATTGAGATCTTTGTCTACAAGAGATGCAGAAACATAGCATGCCAAAACCAGCTTCCTGCTGATGATTGTACCTGTGAGATTTGCACCAACAGGAATGGTTTCTGCAACCTTTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTCAATACATGTCGCTGGATTGGATGTGATTTATGTTCTCATTGGACACATACAGATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGTGAAGAGTGGAGCAGGACCAAGTGAGATGGTTTTCAGGTGTCAAGCATGCAATAGGACTTCAGAACTGTTGGGTTGGGTTAAAGATGTTTTCCAACATTGTGCACCATCCTGGAACGGGGAGGCTTTAATGAGGGAGCTTGATTTTGTTAGTAGGATCTTTCAGGGTAGTAAAGACCCACGCgggacaaaattattttggaagTGCAAGGAACTCAAGGAAAAGATGAAAAGTGGAATAGCAGAATCAAAGGCAGCTTGCAGggcaatattattatttttccaagAGCTCGAGGTGGAGTCACCGAAGAGCCtagaaaatggagaaagtgGAAGGCTGATTGCTCCACAGGAAGCATGCAATAGAATTGCTGAGGTGGTGCAGGAGGCCATAAGAAAGATGGACATGGTAGCTGATGAGAAGTTGAGAATGTTTAAGAAGGCCCGCATGGCGCTTGACAGTTGTGATCGTGAGTTGGCAGACAAGGCCAGGGAAGCAGCAGAACTTAAGATGGAGAggcaaaaaaggaaattacagGTTGAAGAACTGGAGAGAATTGTGAGGCTTAAAACTGCAGAGGCTGAAATGTTCCAATCTAAGGCTAATGAGGCAAAACGAGAGGCTGAGAGGCTCCAGAGGATTGCTCTTGCCAAACAAGATAAATCAGAGGAAGAATATACAAGCAACTACTTAAAACAACGATTAAGTGAGGCTGAGGCTGAGAAGAAATATCTGTATGAGAAGATCAAATTGCAGGAGAGTAGCCGCACATCACAGGGCAGCAGCGGTGGTGACCCCTCTCAGATGCTTCTCTTTTCCAAAATCCATGATCTGCTTCAACCAAATGAACGCCATTCTCTCCGGACTAATCCATG 1676 0.4189 MLPPRQQSRVGGLQTSLSLVSSDPRLSPEEPRSNSDNNRDSPTESASSRETWPTADAIAAKKMENGKAENDGMEQSVIRRVSCADKITLQDIARERVDMISEKMEHLPEEFLEELKNGLRVILEGGNGSQHREEFFILQKLVQSRTDLTAKTLLRAHRVQLEILVAINTGILGFMHPSISLSQNSLIEIFVYKRCRNIACQNQLPADDCTCEICTNRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSVKSGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWNGEALMRELDFVSRIFQGSKDPRGTKLFWKCKELKEKMKSGIAESKAACRAILLFFQELEVESPKSLENGESGRLIAPQEACNRIAEVVQEAIRKMDMVADEKLRMFKKARMALDSCDRELADKAREAAELKMERQKRKLQVEELERIVRLKTAEAEMFQSKANEAKREAERLQRIALAKQDKSEEEYTSNYLKQRLSEAEAEKKYLYEKIKLQESSRTSQGSSGGDPSQMLLFSKIHDLLQPNERHSLRTNP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00638 558 SMART PHD_3 225 285 IPR001965 -
Bva12g00638 558 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
Bva12g00638 558 PIRSF UCP025218 1 556 IPR004082 -
Bva12g00638 558 Coils Coil 461 488 - -
Bva12g00638 558 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Bva12g00638 558 MobiDBLite consensus disorder prediction 1 23 - -
Bva12g00638 558 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 549 IPR004082 -
Bva12g00638 558 MobiDBLite consensus disorder prediction 518 535 - -
Bva12g00638 558 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Bva12g00638 558 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Bva12g00638 558 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Bva12g00638 558 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Bva12g00638 558 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Bva12g00638 558 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Bva12g00638 558 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Bva12g00638 558 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Bva12g00638 558 Coils Coil 419 453 - -
Bva12g00638 558 PANTHER PROTEIN OBERON 2 1 549 - -
Bva12g00638 558 MobiDBLite consensus disorder prediction 1 53 - -
Bva12g00638 558 MobiDBLite consensus disorder prediction 38 52 - -
Bva12g00638 558 MobiDBLite consensus disorder prediction 518 558 - -
Bva12g00638 558 CDD PHD_OBE1_like 225 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00638 Bva-Chr12 8208802 8211737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00638 195 297 PHD Gene Family AT5G57380 31.731 6.65e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00638 - - gmx:100795450 969.148