Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00624 ATGGGTCGCTCCCGAGCTGCTTCGCGCCAACCTGATGATGACCCCAACCAAAGatacaagagaaaaagagctttAAATGCCGAGAATTTGGTAACTTCGTCTACAGGCCTGGGAATAAGTGAAGGGAAAGCATCTCTATACCACTGCAATTATTGCAACAAAGATATTTCAGGGAAGGTTCGCATTAAGTGTGCAGTATGTCACGATTTTGATCTTTGCATAGAGTGCTTCTCAGTTGGAGCCGAGCTGACACCTCACAAAAGCAATCATCCATACAGGGTTATGGACAATTTATCTTTTCCACTTATATGTCAAGACTGGAGTGCAGATGAAGAGATGTTACTTTTAGAGgGCATTGGAATGTATGGATTTGGGAATTGGGCTGAGGTTGTAGAATATATTGGAACAAAGAGCAAATCTCAATGTATTGAGCACTATAATGCTGTATATATGAATTCACCATGCTTTCCTCTCCCTGATTTGTCTCAAATTATGGGAAAGAGCAGAGAGGAACTCCTTGCTATGGCAAATGGGCAGAGTGAAATTAAGAAAGAGCCTTCTCCAACTGGCGAGCTTACACTGAAGGAAGAGCCTCCCTTTTCTGCAGAGATAAACTCTCAGGATGCTAACAAGAAAGAACCCACTAATCAAAAGTCGTCAACCTCAACTTCAGGTGCTGATAAGGGTTCAATGTGTGGCAAAACATACTCAAGTCCCATTAAGAAGGCTTCCAACATGGCCCCATCTAACGATAGTGTTAAAGTGGAAGAATCTCAAGCAGATCGAAGCATCGGAGAGAAGAAACCTAAATTGTTTGGGGAAGATGGACCTTCTATGACAGAGTTGAGTGGATACAATTTTAAGAGGGAGGAGTTTGAGATTGAATATGACAATGATGCAGAACAAATACTGGCAGATATGGAATTTAAGGACACTGATACTGAAGCTGAATGTGAACTGAAACTACAAGTTCTTCGTATCTACTCGAAAAGGCTAGATGAGCGAAAACGCAGAAAGAATTTTATACTAGAAAAAGGTTTACTTTACCCTGACCCTTTTGAAAATTCTCTCTCACCCGAAGAGCGGCAAATATGCCAACAGTTCAAGGTCTTCATGCGGTTTCACTCCAAAGAAGACCATGTGGAGTtcctaaaaaatatcattgagGAACATCGTCTTGTCAAAAGAATACAAGATCTTCAGGAAGCACGAGCTGCTGGCTGTCGAACTGCTGCTGAAGCGTCTAGATATATCGAACAAAAGAGGCTAAAGGAAGCTGAACAAAATACTGCTAGGGAAAGTAGTCAGGCTGGTACAGGTGCTAAAACCTTACCTAAGGCAAAAGGAGAACTTGACAGCAGCCCTAGAGGAGTTCATATGGGAAACACAAGTCCATTTCCTGGCAGCAAGGATTCACCTATGGCAGTGCAAGCTCCCTCATGGTCTCTTGATGATTGGGATGTCTCAGAATTTGACGGGGCCGAGTCGCTATCAGAATCTGAGAAAAAGCTTTGCAATGAGATCAGAATACTTCCTTCGCACTATCTCAACATGCTGCAGATCATGTCAATAGAAATTTCGAATGGAAGAGTGACTAAGAATTCAGATGCTCATACCTTGTTCAAGGTAGATCCAAGTAAAGTGGACAGAGTTTATGATATGCTTGTGAAAAAGGGTGTTGCTGAACCATG 1691 0.4145 MGRSRAASRQPDDDPNQRYKRKRALNAENLVTSSTGLGISEGKASLYHCNYCNKDISGKVRIKCAVCHDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICQDWSADEEMLLLEGIGMYGFGNWAEVVEYIGTKSKSQCIEHYNAVYMNSPCFPLPDLSQIMGKSREELLAMANGQSEIKKEPSPTGELTLKEEPPFSAEINSQDANKKEPTNQKSSTSTSGADKGSMCGKTYSSPIKKASNMAPSNDSVKVEESQADRSIGEKKPKLFGEDGPSMTELSGYNFKREEFEIEYDNDAEQILADMEFKDTDTEAECELKLQVLRIYSKRLDERKRRKNFILEKGLLYPDPFENSLSPEERQICQQFKVFMRFHSKEDHVEFLKNIIEEHRLVKRIQDLQEARAAGCRTAAEASRYIEQKRLKEAEQNTARESSQAGTGAKTLPKAKGELDSSPRGVHMGNTSPFPGSKDSPMAVQAPSWSLDDWDVSEFDGAESLSESEKKLCNEIRILPSHYLNMLQIMSIEISNGRVTKNSDAHTLFKVDPSKVDRVYDMLVKKGVAEP 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00624 563 CDD SANT 107 147 IPR001005 -
Bva12g00624 563 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 154 IPR017930 -
Bva12g00624 563 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Bva12g00624 563 MobiDBLite consensus disorder prediction 203 254 - -
Bva12g00624 563 MobiDBLite consensus disorder prediction 255 274 - -
Bva12g00624 563 Gene3D - 100 152 - -
Bva12g00624 563 MobiDBLite consensus disorder prediction 424 477 - -
Bva12g00624 563 SUPERFAMILY Homeodomain-like 99 153 IPR009057 -
Bva12g00624 563 SUPERFAMILY RING/U-box 47 110 - -
Bva12g00624 563 ProSiteProfiles SWIRM domain profile. 477 563 IPR007526 GO:0005515
Bva12g00624 563 MobiDBLite consensus disorder prediction 201 277 - -
Bva12g00624 563 SMART zz_5 43 87 IPR000433 GO:0008270
Bva12g00624 563 CDD ZZ_ADA2 47 95 IPR041983 -
Bva12g00624 563 PIRSF Txn_adaptor_ADA2 34 563 IPR016827 GO:0003713|GO:0006357|GO:0035065
Bva12g00624 563 MobiDBLite consensus disorder prediction 1 20 - -
Bva12g00624 563 Gene3D - 40 95 IPR043145 -
Bva12g00624 563 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Bva12g00624 563 SMART sant 103 152 IPR001005 -
Bva12g00624 563 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 562 IPR034318 GO:0003713|GO:0006357|GO:0035065
Bva12g00624 563 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 562 - -
Bva12g00624 563 SUPERFAMILY Homeodomain-like 476 560 IPR009057 -
Bva12g00624 563 Pfam Myb-like DNA-binding domain 105 147 IPR001005 -
Bva12g00624 563 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Bva12g00624 563 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Bva12g00624 563 Gene3D - 480 562 IPR036388 -
Bva12g00624 563 Pfam Zinc finger, ZZ type 47 86 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00624 Bva-Chr12 8130627 8138153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00624 1 562 EF-hand Containing Proteins AT3G07740 53.819 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva12g00624 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00624 K11314 - gmx:100779424 791.571