Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00623 AtgtcttcttcatcatcatcgtcatcCTCTTCTTCAACCAATGATGACATTAGCAATGCTGGCGGTGGTGCTGCTGCTCCTGGCCCTAGCACCAGAAGAAGCTTTGATTTTCATGGCCCATCTCCCTCTCGTCGACGTGCCATGAATGAGGTTTGGCCTGCGCCATTTTTGGAAGCTTTAGCCACACAGGTTGCTGTTGAAGCTGCTCGTTCTCAAGGGCGTCTCTCTGCTGCTACTGCACTTGCCAATGTGTTTCAGGTTTGTTCTACATGGCGAGCTGTCTCGCGCTCTAATCCCCTGTGGCAGCGGCTCACCAGACGCATCTGGCGCCGTAATCAGTTGCTCCGCGACACGTGGCACGACGAGTTCATCTACTGGCATCGAGCGGCTATGAACTTCCGCGTAGGCAGATACTCCTACACCACCCTACACTTTGATCCCTCCGACGCTGACGGTGATCCCGACAGCCTCATATGTCGGTGCCTCACCCTCTCCGACCACCATCTTGCTTGTGGTTTCGCCGACGGAACCGTCAGACTCTTCGACCTCGGCACCGGATTCCCCGTCAGCACCTTCCGATCCAACCTCCGCAACCGTCTTGGCCGATTTTCTCGGGCCATATCGGGCATTTTGATTACCAACTCCCGGCTCGTGTTTGCCGCGTTGGACGGTGACATCTACGTGGCAATGTTAAATGCGCCAGCTCAGCATCCTCGTAGGGCCCGTGTTGGCGACGTGGTGACCAACGGGACCTTAGTAGAATTCACCGGGTGCGGACGCTGGTGGGTCGGTTTATTCGCCGGAGTCCCTGGTCGGGCCATCCACATATGGGACGCTCGCACAGAAGAACCCGTTTTCATCGGCGGAACCTTGACCGACCCGGAAGCTGTTATGGGTTGGCACATGCTAACCGAGGTAACCGAACCGGTGGGTCGACTCCGAGTTACAACCCGAGAAGTCGCCGTGGCCTGCACCAGCTCGAGGCTCATAGTCTTCGACCTCAGAAACCCCGAGTTTTTATTACATGAGGTAGAGTCCTCCACAGGTTTCGTTGTAACCTCGCTTGACGTCAGCAACGAGGCGTTCGTTATCGCGGACAACCTCGGCTGGGCAACAGTGCGCCGGGCGAGCACGTTAGAACTCCTCTGCCGTAGATTCTCCACAAGGGGCCCAGGCGCAGCCGCACCAGCGCCCACAAGCAATACGCTAATGGGTTGCATCAACCTAGGGTACGCGCTAATGTACACCGGAGGCGTAATACGGGTGTGGGAAGCAGAACACGGCCGGAACCGGTACCGGTTCCGAGAAAGAGTAGGCGAGCCAAATGCCATGGTGGCAAACCAGAGACACGTGGCACTCGCAAGCAACGACACTTTGATACACCTGTGGGATTTTGGTGTACAGTA 1406 0.5583 MSSSSSSSSSSSTNDDISNAGGGAAAPGPSTRRSFDFHGPSPSRRRAMNEVWPAPFLEALATQVAVEAARSQGRLSAATALANVFQVCSTWRAVSRSNPLWQRLTRRIWRRNQLLRDTWHDEFIYWHRAAMNFRVGRYSYTTLHFDPSDADGDPDSLICRCLTLSDHHLACGFADGTVRLFDLGTGFPVSTFRSNLRNRLGRFSRAISGILITNSRLVFAALDGDIYVAMLNAPAQHPRRARVGDVVTNGTLVEFTGCGRWWVGLFAGVPGRAIHIWDARTEEPVFIGGTLTDPEAVMGWHMLTEVTEPVGRLRVTTREVAVACTSSRLIVFDLRNPEFLLHEVESSTGFVVTSLDVSNEAFVIADNLGWATVRRASTLELLCRRFSTRGPGAAAPAPTSNTLMGCINLGYALMYTGGVIRVWEAEHGRNRYRFRERVGEPNAMVANQRHVALASNDTLIHLWDFGVQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00623 468 PANTHER WD40 REPEAT PROTEIN 12, 37 1 468 - -
Bva12g00623 468 MobiDBLite consensus disorder prediction 1 19 - -
Bva12g00623 468 Gene3D - 149 402 IPR015943 GO:0005515
Bva12g00623 468 SUPERFAMILY F-box domain 78 165 IPR036047 GO:0005515
Bva12g00623 468 MobiDBLite consensus disorder prediction 1 42 - -
Bva12g00623 468 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 143 465 IPR011047 -
Bva12g00623 468 PANTHER TRANSCRIPTIONAL REGULATOR STERILE APETALA 1 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00623 Bva-Chr12 8123930 8129066 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Bva12g00623 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00623 - - pxb:103935441 557.37