LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g00615	ATGGACCATTGCCTTCACAATGACAGCAATGCCAATAGCACTTGGTTATTACCATGTTTTCAGCTACATGCCACTGTTATACCAGACCTATTTGTAACGTTCATATCTCACAGCATAACATCATTTGCTGTCATAGCAAATCTCCTCAGTGACCTTAAAATCTTGAACTCAGAACTCGGCAGGCTAGCATTGTCCACAGCATTGGTGAGTGACATGCTGAGCACTTGTATGACAAGTCTAGGCACTGGCATTGTGAGGCGTTTGTATGAGAGACAAAAGATTATGACAAACATTCTGTCATTGTTTGCATTCTTTGTGCTCATTCCATTGCTATTCCGGCCGGCGATGCGATGGATTATCAGACAAACACCACAAGGAAGACCTGTGAAGGAAGCTTACATCTATTCCATCATAGCAATGGTGCTTTGTATGGGCATGCTTGCAATTCTTTTGGATCAAGAATTCTATTTGGGTGCCTTTATTTTGGGGTTGGCTGTGCCTGAAGGTGCTCCATTGGGGACTGCATTGGTTAAGAAGCTTGAATTGTTTGGGACATGGTTCCTATTGCCAGTCTTTGTGACTACTTGTATGATGAAGGCAGATCTTTCATTGGAGTgtacaaaattatcaatttggATTGTTAGTAGCTTTGTCTTGGGTGCCCATCTAGTCAAAATGATAGCATGCTTGGTACTTGCACTATGGTGCAAGATGTCTAAAAAAGACTCTTTGGCTCTTGCCATAATTTTGAACTGCAAAGGGGTAGTGGAAGTCTGCTCATATAATGCCATGTATGATAAAAAGTGTAAGCTTCAGATTTTCGGGGCGAATTGCATGGCTTCCAATTTGGGTCCTTCATCTTCCATTCTCATCTTCAATACACTCAGGAGTGAACCTTACCTAACCCGAAAGTTCAATGATTTTCCTGGGAAAATATGGGGTTCTCGCATTTTCTCTGGAATCACAGCAAGAAAGCATTTTCACGTCAAATCTTCAAATGGGCATCCACTAAATGCTATTTCTTCTCAGGATGGTTTACCTGGAAGTCCATTGGCCAAAGAACACATCAAGCCTCAGCTGGTAGAAGAATCTTTTCCTGTGTCAGGCTCTGAATGTGTAGAATCCAACCTTAGCATAACTGTGGTTGGAGCTTCAGGGGATCTTGCCAAAAAGAAGATTTTCCCAGCACTCTTTGCTCTTTACTATGAAGATTGTCTACCTGAGAATTTCATTGTGTTTGGATATGCTCGGACAAAAATGACCAATGAAGACTTAAGAACCATGATTAGCGAAACTCTGACATGCAGAATTGATAAGAGGGAAAATTGTGATGATAAAATGGCTCAATTCTTAAGCAGATGCTTTTACCATTCCGGTCAGTACAACTCCGAGGAGGACTTTTTGAAATTAGATTGCAAgctgaaagagaaagaggGTGAAAAACTCTCAAATAGGTTGTATTACTTGTCAATACCTCCAAATATATTTGTAGATGTGGTGAGATGTGCTAGCATGAAAGCTTCTTCCGAAAAGGGGTGGACAAGGGTTATTGTGgaaaagccatttggtcgtGACTCAGAATCATCCAGTGAGCTAACTAGATGTTTGAAGCAATACCTCACGGAAGACCAAATATTCAGgATTGACCATTACTTGGGCAAGGAGCTTGTGGAGAATCTGTCTGTGCTTCGCTTTTCAAATCTTGTCTTTGAGCCTCTATGGTCCCGGAACTACATTCGCAATGTGCAGATAATATTTTCTGAAGATTTTGGAACAGAGGGAAGAGGAGGtTACTTTGATCACTATGGAATAATACGCGATATAATCCAAAATCATCTTCTGCAAATACTAGCTCTGTTTGCAATGGAAACACCCGTGAGCTTGGATGCTGAAGACGTCAGAAATGAAAAGGTCAAGGTTCTGAGATCGATGAGACCACTGCGACTGGAAGATGTAGTTGTTGGTCAATATAAGGGCCATAGCAAGGGTGGTAGATCTTATCCTGGGTATACAGATGACTCAACTGTTCCAAGTGGTAGTCTTACGCCAACATTTGCTGCCGCGGCTCTTTTCATTAACAATGCTAGATGGGATGGGGTACCTTTCCTTATGAAAGCTGGCAAGGCCCTGCACACCAAGCGTGCAGAAATCAGAGTACAATTCAGACATGTCCCAGGTAACTTGTACAAACGAAATTTTGGAACTGATCTGGACAAGGCCACGAATGAGCTCGTGCTTCGCGTGCAGCCTGATGAAGCTATATACTTGAAGATCAACAACAAAGTTCCCGGTCTGGGAATGAGATTAGACAGAAGTGACCTGAATTTGCTTTACCGAGCAAGGTATCCAAAGGAGATACCAGATGCATATGAGAGGTTACTCTTGGACGCGATAGAAGGCGAGCGACGGTTGTTTATCAGAAGTGATGAGCTTGATGCTGCTTGGGCAATATTCACTCCATTGCTGAAAGAGCTTGAAAACAAGAAGATTGCTCCGGAGCTCTATCCCTATGGCAGCAGAGGACCAGTTGGAGCACATTATCTTGCTGCCCGGCACAACGTCCGGTGGGGAGATCTTGGTTCTGAAGATTG	2591	0.4195	MDHCLHNDSNANSTWLLPCFQLHATVIPDLFVTFISHSITSFAVIANLLSDLKILNSELGRLALSTALVSDMLSTCMTSLGTGIVRRLYERQKIMTNILSLFAFFVLIPLLFRPAMRWIIRQTPQGRPVKEAYIYSIIAMVLCMGMLAILLDQEFYLGAFILGLAVPEGAPLGTALVKKLELFGTWFLLPVFVTTCMMKADLSLECTKLSIWIVSSFVLGAHLVKMIACLVLALWCKMSKKDSLALAIILNCKGVVEVCSYNAMYDKKCKLQIFGANCMASNLGPSSSILIFNTLRSEPYLTRKFNDFPGKIWGSRIFSGITARKHFHVKSSNGHPLNAISSQDGLPGSPLAKEHIKPQLVEESFPVSGSECVESNLSITVVGASGDLAKKKIFPALFALYYEDCLPENFIVFGYARTKMTNEDLRTMISETLTCRIDKRENCDDKMAQFLSRCFYHSGQYNSEEDFLKLDCKLKEKEGEKLSNRLYYLSIPPNIFVDVVRCASMKASSEKGWTRVIVEKPFGRDSESSSELTRCLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQIIFSEDFGTEGRGGYFDHYGIIRDIIQNHLLQILALFAMETPVSLDAEDVRNEKVKVLRSMRPLRLEDVVVGQYKGHSKGGRSYPGYTDDSTVPSGSLTPTFAAAALFINNARWDGVPFLMKAGKALHTKRAEIRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLDRSDLNLLYRARYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWAIFTPLLKELENKKIAPELYPYGSRGPVGAHYLAARHNVRWGDLGSED	863

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g00615	863	Pfam	Sodium/hydrogen exchanger family	31	261	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Bva12g00615	863	PANTHER	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 2, CHLOROPLASTIC	369	862	-	-
	Bva12g00615	863	Pfam	Glucose-6-phosphate dehydrogenase, C-terminal domain	562	856	IPR022675	GO:0004345\|GO:0006006\|GO:0050661
	Bva12g00615	863	ProSitePatterns	Glucose-6-phosphate dehydrogenase active site.	549	555	IPR019796	GO:0004345\|GO:0006006
	Bva12g00615	863	PRINTS	Glucose-6-phosphate dehydrogenase signature	609	625	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	PRINTS	Glucose-6-phosphate dehydrogenase signature	515	528	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	PRINTS	Glucose-6-phosphate dehydrogenase signature	696	722	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	PRINTS	Glucose-6-phosphate dehydrogenase signature	539	567	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	PRINTS	Glucose-6-phosphate dehydrogenase signature	591	608	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	549	856	-	-
	Bva12g00615	863	Gene3D	-	372	547	-	-
	Bva12g00615	863	PANTHER	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD	369	862	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	TIGRFAM	zwf: glucose-6-phosphate dehydrogenase	377	857	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	Gene3D	-	13	276	IPR038770	-
	Bva12g00615	863	Pfam	Glucose-6-phosphate dehydrogenase, NAD binding domain	381	559	IPR022674	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	Hamap	Glucose-6-phosphate 1-dehydrogenase [zwf].	376	858	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Bva12g00615	863	Gene3D	Dihydrodipicolinate Reductase; domain 2	548	857	-	-
	Bva12g00615	863	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	373	562	IPR036291	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g00615	Bva-Chr12	8083316	8091373	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g00615	37	268	Antiporter Super Family	AT1G08140	36.929	1.01e-36	147

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g00615	K00036		-	gmx:100801945	979.548