Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00598 ATGCGGGAGTTATACCTTAATTTCAATAATCTCAGTGGAAACATacccaaagaaataaaaaatctaacccTACTCACGACGTTGTATCTTGACCATAACTTTTTCAAAGGAACCATTCCGAAAGAAATTGGAAACCTATCTATGCTCATTGACATACGGATCGGACATAACGGGTTCCATGGTGGAGAAGAGTCTATGACACAAACTATGACCCTTGCTACCATTGGATATATGGCACCAGAATATGGATCAGAAGGAGTCATTTCTACAAGAAGTGATGCATTTAGCTTTGGTAGTAACTTGGAAGACAGTTTGAATGTGCTGAACTCTTCTGAAACAAGTCAGGCGGCCcctataaaaacaaaaaaactttttGTGACAGgCCTTTCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGACATTGTTGAAGTTAAAGTTATTATggataaaatttctaaaaggTCCAAGGGTTATGCATTTGTGGAATACACAACAGAGGAGGCTGCAAGTGCAGCACTGAAGGAGATGAATGGCAAGGTAGATTCATTGATCTCTGCAATGTCGGCATACACTGTTTGCTTTTGGACTGTGTA 614 0.3616 MRELYLNFNNLSGNIPKEIKNLTLLTTLYLDHNFFKGTIPKEIGNLSMLIDIRIGHNGFHGGEESMTQTMTLATIGYMAPEYGSEGVISTRSDAFSFGSNLEDSLNVLNSSETSQAAPIKTKKLFVTGLSFYTSEKTLRAAFEGFGDIVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKVDSLISAMSAYTVCFWTV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00598 204 Gene3D Ribonuclease Inhibitor 1 75 IPR032675 -
Bva12g00598 204 SUPERFAMILY RNA-binding domain, RBD 110 186 IPR035979 GO:0003676
Bva12g00598 204 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 187 IPR000504 GO:0003723
Bva12g00598 204 SUPERFAMILY Protein kinase-like (PK-like) 65 98 IPR011009 -
Bva12g00598 204 SUPERFAMILY L domain-like 2 67 - -
Bva12g00598 204 SMART rrm1_1 123 194 IPR000504 GO:0003723
Bva12g00598 204 Gene3D - 102 189 IPR012677 -
Bva12g00598 204 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 186 IPR000504 GO:0003723
Bva12g00598 204 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 108 187 IPR039206 GO:0016554
Bva12g00598 204 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 108 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00598 Bva-Chr12 7918309 7925524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00598 119 181 C2H2 Transcription Factor Family AT2G19380 42.857 2.30e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00598 - - gmx:100791652 159.844