Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00597 ATGTCACCATTTCAAGTTATGTTTGGTCGAACTCCTCCCTCCATTCCACAGTACATACCAGGAACTAGCAACTTGGAAGCTGTTGATCAAGAATTACAGACTAGGGAAGCTATTTTTGAACAActccaaaagaaattgcaCAAGGCTCAAGTAGCAATGAAAGAAATATCTAGCTGCATCAATGAGGTTGCCTTTGAATTAGCCTTACCTCCGACGGCAAAAATCCACCCAGTATTccatgtttcaaaatttaagccATGTAAAGGTATAGACACACCTACCTTATCCTTACCACCCTTGTCCAAAGATAATCAACCTCTCATTGAGCCTGCTGCAATTTTGGATACACGCAATGCAGAGGACCCTAAAAACACAATGGTTTTAGTTCAATGGTTGGGGTTATATCCAGAAGACTCCACCTGGGAATCTCTTTCgcaattaaaaaatgactatCCCAACTTCCACCTTGAGGACAAGGTGGTTTTGGATCGTGGGAGGGATGCTATGAATCAGCAAGAAGGATGGGATGAAGGCCCAAGCAGTGATGCAGAGGAAGAACCTGAGATAACCATTCCACAAGTTAGGGCCAAGAGAAATAAGAGTTGTGGCTTAAGTTCTTTGATATCCTCATTTCAAATAGCTACTACTTCACTGCACACCATCAACCTTCTCAAAACTATGAAGCTTCTCAAAACTCCGTACCAtccattctttcttttgttctctATGATTCTGATACTGCTGCTACTCTCAATCCCTGCTGTGCAAGCCCATACAAATGAGACTGATAGATTGGCGTTGCTCAAATTTAAAGAAGCCATAATCAAAGACCCATATGGAATTCTGAGCTCATGGAATGACTCAACTCACTTCTGCAATTGGTCCGGGGTATGGTGTGGCCGTAAGCACCGGAGAGTTACACTCTTACAAATAGAGAACTATGGCTTAAGTGGATCTATATCACCTTATATAGGcaacctttcttttcttggtacCATTGCGCTCCGCCACAACTATTTGTTTGGCCAAATCCCAAGAGAAGTTGGTCGACTGTTTCGTCTGCAAGAGTTGCTACTACGGAATAACAAATTAACTGGACAAGTTCCAACAAACTTGGGTAACTGCTCTAAACTCAGTCTCATTAGCTTGGCAATCAATCAGTTGGTAGGGACAATACCTACTGAGTTTGGTTCTTTAATGAAGCTGTACTTTCTTCATGTCGGATACAATGATCTGACAGGAAGCTTGCCATCTACTTTAGGGAATCTTTCATCACTTGAAGTTTTTGGTGCAGAGGAGAACAATTTGGATGGAGTTATTCCACATGGAATTGGCAGTTTGAAAAAGCTATCCATTTTCTCAATTGCAGTTAATAAACCATCTGGTAAAATCCCTTCTTCTCTCTATAACATTTCTTCTATGAGTAAGTTCTCAGCTATACAGAACAAACTAGCAGGCAACCTACCAGACTACATAGGCACCACAATGTCAAATCTCCATGTACTTACACTCGGCATTAATCAACTATCTGGGCCAATTCCAGCATCACTCTCCAATATTTCTAGTCTTTCTTCCGTTGACTTGGctcataataattttgtggGATCAGTTCCAACCAATTTGGGAAATTTACAAGAGCTGTCCTGGCTAGGGTTAAATCACAATAATTTGGGACATAATTCCAGGGAAGATTGGAAGTTTTTGAACTCATTGGTAAACTGTAGCAAATTGGAATACCTTAGCCTCAGTGCTAATAATATTGGAGGTGTTCTACCAGCAGCTATTAGCAACCTATCAACCCAACAGTTGAAAATTCATTCTAATAAGATATACGGtttttcatccaaaaattTGATTGGATCTGGTAGTTTTGGTTCTGCATATAAAGGGACTCTGGATCAGGAGGAAAGACTTGTAGCTGTGAAGGTCCTCAATCTACAGAAGAAGGGAGCTTCAAAGAGCTTCCTGGCAGAATGCAATGCCTTGAAAGGAATTAGGCATCGAAACCTTGTCAACCTTCCAATATTCTCCTTGATGCTGATCTTGTTTGGCTCGGCAAGACTTCTATCTGCCACCACTCAAGTTTCTGAAACAAAATCCAGCTCAATTGGATTAAAGGTATTTGTGGGATATGCAGCTCCAGAGTATGGATTAGAAGGGAAAGCTTCAAAGGAAGGCGATGTCTATAGCTTTGGGATCCTGATATTAGAAATGTTCACCGGAAAGAGACCCACAGATGAGATATTCATCGATGATTACAATCTTCATAATTACGTGAAAGAAGCATTGCCTGAATATCTTTTACAGGTTGCAGACCCCATTCTtcttgaggaagaagaaactgGAGAGATCATCCAGAGATCCATTGTTTCAATCTTGGAAATCGGGCTCGCTTGCTCTGAGAAGTCTCCGGAGGGAAGAATGAATGTGGAGGCTGTGACACGGCAATTGCAAACGgatcaatgtaaaatgaaatacCTTGAGAGGTTGGATCTTAGCAGCAATCAATTTAGGGACAAACCTTTTCAGTGCCTAGGCAATTTGTCCATCGTTCGAGTACTTGATTTTACAGATAATATGCTAAGTGGTAATTTTCCATTATTTATTGTCAACCTCAACGTAAACATGAAACGTGGAAGAACAATTCCCACTTTTCCTCTGTTCCAAAAGGATTTGAAATATGTAGACCTTTCCCACAACATGGTTGGAACATTCCCAAGTTGCTTAATGCAAAATAATCTAGGATTGAAAGTTCTTGTTTTGAGGAATAACTCATTGGTTGGAAGCATATACCTGTCCTCGCCCATTCTAGACATAAAGCACCTTGATATGTCAACCAACAGGATGAGTGGATTGCTTCCGGAAGATATAGGTCTTTGCCTTCCAAATGTTACATATCTGAACCTTTCAGTGAACAGTTTTGAAGGCAATATACCCTCATCTATTGGTGACATGAGAAAACTTCAGTCGTTAGATTACTA 2981 0.3871 MSPFQVMFGRTPPSIPQYIPGTSNLEAVDQELQTREAIFEQLQKKLHKAQVAMKEISSCINEVAFELALPPTAKIHPVFHVSKFKPCKGIDTPTLSLPPLSKDNQPLIEPAAILDTRNAEDPKNTMVLVQWLGLYPEDSTWESLSQLKNDYPNFHLEDKVVLDRGRDAMNQQEGWDEGPSSDAEEEPEITIPQVRAKRNKSCGLSSLISSFQIATTSLHTINLLKTMKLLKTPYHPFFLLFSMILILLLLSIPAVQAHTNETDRLALLKFKEAIIKDPYGILSSWNDSTHFCNWSGVWCGRKHRRVTLLQIENYGLSGSISPYIGNLSFLGTIALRHNYLFGQIPREVGRLFRLQELLLRNNKLTGQVPTNLGNCSKLSLISLAINQLVGTIPTEFGSLMKLYFLHVGYNDLTGSLPSTLGNLSSLEVFGAEENNLDGVIPHGIGSLKKLSIFSIAVNKPSGKIPSSLYNISSMSKFSAIQNKLAGNLPDYIGTTMSNLHVLTLGINQLSGPIPASLSNISSLSSVDLAHNNFVGSVPTNLGNLQELSWLGLNHNNLGHNSREDWKFLNSLVNCSKLEYLSLSANNIGGVLPAAISNLSTQQLKIHSNKIYGFSSKNLIGSGSFGSAYKGTLDQEERLVAVKVLNLQKKGASKSFLAECNALKGIRHRNLVNLPIFSLMLILFGSARLLSATTQVSETKSSSIGLKVFVGYAAPEYGLEGKASKEGDVYSFGILILEMFTGKRPTDEIFIDDYNLHNYVKEALPEYLLQVADPILLEEEETGEIIQRSIVSILEIGLACSEKSPEGRMNVEAVTRQLQTDQCKMKYLERLDLSSNQFRDKPFQCLGNLSIVRVLDFTDNMLSGNFPLFIVNLNVNMKRGRTIPTFPLFQKDLKYVDLSHNMVGTFPSCLMQNNLGLKVLVLRNNSLVGSIYLSSPILDIKHLDMSTNRMSGLLPEDIGLCLPNVTYLNLSVNSFEGNIPSSIGDMRKLQSLDY 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00597 993 Pfam Protein kinase domain 614 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00597 993 SUPERFAMILY L domain-like 283 615 - -
Bva12g00597 993 Gene3D Ribonuclease Inhibitor 564 620 IPR032675 -
Bva12g00597 993 Gene3D Ribonuclease Inhibitor 262 379 IPR032675 -
Bva12g00597 993 Gene3D Ribonuclease Inhibitor 469 563 IPR032675 -
Bva12g00597 993 Gene3D Ribonuclease Inhibitor 816 993 IPR032675 -
Bva12g00597 993 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 244 599 - -
Bva12g00597 993 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 683 819 - -
Bva12g00597 993 Gene3D Phosphorylase Kinase; domain 1 621 676 - -
Bva12g00597 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 244 599 - -
Bva12g00597 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 610 672 - -
Bva12g00597 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 683 819 - -
Bva12g00597 993 Gene3D Transferase(Phosphotransferase) domain 1 677 815 - -
Bva12g00597 993 Pfam Protein tyrosine and serine/threonine kinase 693 760 IPR001245 GO:0004672|GO:0006468
Bva12g00597 993 Coils Coil 25 45 - -
Bva12g00597 993 ProSiteProfiles Chromo and chromo shadow domain profile. 108 148 IPR000953 -
Bva12g00597 993 SUPERFAMILY Chromo domain-like 73 150 IPR016197 -
Bva12g00597 993 Gene3D Ribonuclease Inhibitor 380 467 IPR032675 -
Bva12g00597 993 Pfam Leucine rich repeat N-terminal domain 261 299 IPR013210 -
Bva12g00597 993 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 824 992 - -
Bva12g00597 993 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 610 672 - -
Bva12g00597 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 824 992 - -
Bva12g00597 993 SUPERFAMILY L domain-like 821 992 - -
Bva12g00597 993 ProSitePatterns Protein kinases ATP-binding region signature. 619 642 IPR017441 GO:0005524
Bva12g00597 993 SUPERFAMILY Protein kinase-like (PK-like) 607 831 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00597 Bva-Chr12 7904493 7909990 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00597 845 993 Receptor kinase-like Gene Family AT5G20480 28.000 3.00e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva12g00597 PK_Tyr_Ser-Thr 1.8e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00597 - - qsu:112006509 376.711