Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00592 ATGTCAAATCTCCATGTACTTGCACTCGGCATTAATCAACTATCTGGGCCAATTCCAGCATCACTCTCCAAtatttctggtctttcttccgtTGACTTGGctcataataattttgtggGATCAGTTCCAACCAATTTGGGAAATTTACAAGAGCTGTCCTGGCTAGGGTTAAATCACAATAATTTGGGACATAATTCCAGGGAAGATTGGAAGTTTTTGAACTCAATGATAAACTGTAGCAAATTGGAATACCTTAGCCTCAGTGCTAATAAGATTGGAGGTGTTCTCCCAGCAGCTATTGGCAACCTATCAACCCAACAGTTGAAAATTCATTCTAATAAGATATATGGTAAGATTCCAGAAGAAATCACATATCTCACGAATCTAACCACATTGAATTTGGAGCAAAACATTCTCACAGGTGTCATTCCTACATCTTTTGGGAAGTTGACAAAGATGCAAGAGCTTCGTCTGGGATTAAACAGATTGTCTGGCCAGATACCAGCCTCTATAGGGGAGGTACCAACAGGAGGGGCATTCAAAAATACCAGTGCCATTTCAATTATTGGAAATAGTTTACTTTGCGGAGGCGTCACTGAATTGCAGCTGCCACGATGCCCTGCCAGTGTTACAAAACAGGCAAAGCATCAACGTTTGAAGCTGGTAATCATAGTTATTTGCGtggttcttttcttcttcctattGGCCATTGCATTTGCTGCTTATcgggtaaaaaaaattaatagaaagacATCGACCTTCCAAAACATTGAGGAACTTCCCAAAGTTTCTTATAAAATGCTCCTGATAGCTACGGCAAGtttttcatccaaaaattTGATTGGATCTGGTAGTTTTGGTTCTGTATATAAAGGGACTCTGGATCAGGAGGAAAGACTTGTGGCTGTGAAGGTCCTCAATCTACAGAAGAAGGGAGTTTCAAAGAGCTTCTTGGCAGAATGCAATGCCTTGAAAGGAATTAGGCATCGAAACCTTGTCAAGTCATTGACATGCTGCTCTAGCATTGATTACAATGGCAATGATTTCAAAGCtcttgtttttgaatttctgaCAAACGGAAGCTTAGAGAAATGGCTACATCCAGAGGGAAGTGAAAATCAACCATTAGACTTCCTTCAGAGACTAAATATTGCAATAGATGTGGCTTCTGCTTTATGTTATCTTCACAATGAATGTGAACTTCCAATTGTTCATTGTGATTTAAAGCCTTCCAATATTCTCCTTGATGCTGATCTTGTTGCTAAAGTAAGCGATTTTGGCTTGGCAAGACTTCTATCTGCCACCACCCAAGTTTCTGAAACAAAATCCAGCTCAATTGGATTAAAGGGATCTGTGGGATATGCAGCTCCAGAGTATGGATTAGGAGGGAAAGCTTCAAAGGAAGGCGATGTCTATAGCTTTGGGATCCTGATATTAGAAATGTTCACCGGAAAGAGACCCACAGATGAGATATTCATCGATGATTACAATCTTCATAATTACGTGAAAGAAGCATTGCCTGAATATCTTTTACAGGTTGCAGACCCCATTCTtcttgaggaagaagaagaagaagaaactggAGAGATCATCCAGAGATCCATTGTTTCAATCTTGGAGATCGGGCTCGCTTGCTCTGAGAAGTCTCCGGAGGGAAGAATGAATGTGGAGGCTGTGACACGGCAATTGCAAACGGTGAGAAGGGTATTCCTGGGTCCAACAAGTGGTGTCAGAAGTTG 1739 0.3807 MSNLHVLALGINQLSGPIPASLSNISGLSSVDLAHNNFVGSVPTNLGNLQELSWLGLNHNNLGHNSREDWKFLNSMINCSKLEYLSLSANKIGGVLPAAIGNLSTQQLKIHSNKIYGKIPEEITYLTNLTTLNLEQNILTGVIPTSFGKLTKMQELRLGLNRLSGQIPASIGEVPTGGAFKNTSAISIIGNSLLCGGVTELQLPRCPASVTKQAKHQRLKLVIIVICVVLFFFLLAIAFAAYRVKKINRKTSTFQNIEELPKVSYKMLLIATASFSSKNLIGSGSFGSVYKGTLDQEERLVAVKVLNLQKKGVSKSFLAECNALKGIRHRNLVKSLTCCSSIDYNGNDFKALVFEFLTNGSLEKWLHPEGSENQPLDFLQRLNIAIDVASALCYLHNECELPIVHCDLKPSNILLDADLVAKVSDFGLARLLSATTQVSETKSSSIGLKGSVGYAAPEYGLGGKASKEGDVYSFGILILEMFTGKRPTDEIFIDDYNLHNYVKEALPEYLLQVADPILLEEEEEEETGEIIQRSIVSILEIGLACSEKSPEGRMNVEAVTRQLQTVRRVFLGPTSGVRS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00592 579 SUPERFAMILY L domain-like 2 196 - -
Bva12g00592 579 Gene3D Transferase(Phosphotransferase) domain 1 357 570 - -
Bva12g00592 579 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Bva12g00592 579 Gene3D Ribonuclease Inhibitor 1 215 IPR032675 -
Bva12g00592 579 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524
Bva12g00592 579 Pfam Protein kinase domain 276 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00592 579 ProSiteProfiles Protein kinase domain profile. 275 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00592 579 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 573 - -
Bva12g00592 579 SUPERFAMILY Protein kinase-like (PK-like) 253 563 IPR011009 -
Bva12g00592 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Bva12g00592 579 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 1 573 - -
Bva12g00592 579 Gene3D Phosphorylase Kinase; domain 1 237 356 - -
Bva12g00592 579 SMART serkin_6 275 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00592 Bva-Chr12 7794987 7797515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00592 3 571 Receptor kinase-like Gene Family AT3G47570 44.901 2.29e-152 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva12g00592 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00592 - - qsu:112023736 533.487