Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00580 ATGgctatacaaataattattcaagAATCCCATGTAGGAAAATTCAGTAGGTTGTGGTTGTACAAGGATATTGATCATGTATTGACAAAGGATAAGGGAACTGAAGCTATTCATGGCATAGTCTACAGTTCTTATAAACGCTACAAATCACGGTGGAACCCGAACGCCTTCTTAAAGATGCGTAATGTTAAACTGTTAAAGTTCAAGAATTTGGATCTTCCACTCGGCCTCAATAGTCTTCCAGAAGGATTAAAATATCTTGAATGGGAGGAATTTCCATTACAAGAATTGCCGCTTGGCGTTCAATTGGATGAAGTTGTTGAACTTAAAATGCATTGTAGCAAGATTAAGACACTTTGGCGTGGAACACAGTCTTTCAGAAAGCTGAAGTTCATTGATTTGAGAGATTCTAAGCGTCTAATTCGATTCCCCAGTGTTTTGGAGGCTCCATGTGTTGAACGATTGGTCCTTGAAGGCTGTATAAATCTTGTAGAAGTTCACAAATCTGTTGGACAGCTCAAGATGCTTAAGGAATTAAACTTGAGAAATTGTGTAAATCTTAAGATCCTTCCAAACAAACTAGAAATGAGTTCACTgaagaattttattctttcaagttgttcaaaacttaaaaggcTTCCAGAATTTGGAGAGCGTCTGGAGTTTCTGGAAGAGCTTGATTTATCAAATTGCAGAAGTCTTGTTTCCTTGCCAAGATCCATTGACAAGTTCAAATCTCTTAGAATTCTCTATTTTTCCGGTTGTTCGAAAGCTTTGAGGCAGCCAGAGAATTTGAAAGAAGTGCTTCCTTCCATTATGCATTTGAAGTATCTTAAAAGATTTTCTATTCCCTTTGGATGGATGTTGGGGAGGCATCATATTTCCTCAAGCATCATGGTGCCTCCAATTTCATGCTTTCCCCTTTTAAAGGAGCTAGATCTAAGTTATTGTGATCTCCGCGATGAATCACTTCCTCCTGAGATTGGCTGCTTATCATCTCTGATTGCGTTAGATCTGAGTGGAAACAATTTTACTGAGCTACCAGCTAGTTGCATTGCTAATCTCTCTAATCTGCGTGGGCTCATCTTGAATTCCTGTGCTGGCCTTAAGTCGATGCCTAAGCTCCCTCCAAATATAGAATGGTTTTTCGGTTTAAATTGTCCTTCATTGGTAACATGGTCAGATCAAGAATGCCTTCCCGATTTTTTTGCAACCCACTCAGACGAGGGGCAGAAGAAGaTTGATTTTCCGACCTTTCgaccaattttgttttttccggGGACTGATATTCCACCATGGTTCAGTAATCAAATGGTGAAAATACCTGAGCAGGACCGGGGTGTCTCTGATTCAGAAATGTCAATGATAGTAGAAATCCCTGATTATTGTCTTTCAAGTGAACGGTGGGATATTGCTGTATGCCTTGTCTTAGAAAATCATGCTCCTGCTTCTACTTTGTCCCTTATGAGCTGGTCTATGGAACTTCCTGGAACTGCACACAAAAAATATGGATTTACGCAGCCGCTCCGCAACTGCGAAAAGTTCTTTGATCCTCACCTTTGTACTTTCCTGATGGGAAGCGAATACATCCACAGAACAGTTCGTCCACATCTGAAATGTGATCAAAACAAACTTCGTGTATCATTTATGGCTCACGAAAATCCGAAAATTAAGAAGTTGAAGATACGCAAGTGTGGTTGGCGTGTGGTATGCAAGGAAGATTTGCAAGTATGGTGGGGCAAAGCAAGGAGTGAACGAGAACAAGACAATGGCTTTGGCTTTGATATGCCTTCCACTTCCAGCATCATTGATCTCCACAAAGCAAGGATAAGGAAAAAACTGATGAACTGGCAAAGATACCAAATGACGATCGAGAACTACGAAAGAAGATATACCCAGTA 1901 0.3882 MAIQIIIQESHVGKFSRLWLYKDIDHVLTKDKGTEAIHGIVYSSYKRYKSRWNPNAFLKMRNVKLLKFKNLDLPLGLNSLPEGLKYLEWEEFPLQELPLGVQLDEVVELKMHCSKIKTLWRGTQSFRKLKFIDLRDSKRLIRFPSVLEAPCVERLVLEGCINLVEVHKSVGQLKMLKELNLRNCVNLKILPNKLEMSSLKNFILSSCSKLKRLPEFGERLEFLEELDLSNCRSLVSLPRSIDKFKSLRILYFSGCSKALRQPENLKEVLPSIMHLKYLKRFSIPFGWMLGRHHISSSIMVPPISCFPLLKELDLSYCDLRDESLPPEIGCLSSLIALDLSGNNFTELPASCIANLSNLRGLILNSCAGLKSMPKLPPNIEWFFGLNCPSLVTWSDQECLPDFFATHSDEGQKKIDFPTFRPILFFPGTDIPPWFSNQMVKIPEQDRGVSDSEMSMIVEIPDYCLSSERWDIAVCLVLENHAPASTLSLMSWSMELPGTAHKKYGFTQPLRNCEKFFDPHLCTFLMGSEYIHRTVRPHLKCDQNKLRVSFMAHENPKIKKLKIRKCGWRVVCKEDLQVWWGKARSEREQDNGFGFDMPSTSSIIDLHKARIRKKLMNWQRYQMTIENYERRYTQ 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00580 633 Pfam Leucine Rich Repeat 107 124 IPR011713 -
Bva12g00580 633 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 230 IPR044974 GO:0006952
Bva12g00580 633 Pfam Leucine Rich Repeat 334 355 IPR001611 GO:0005515
Bva12g00580 633 Pfam Leucine Rich Repeat 223 244 IPR001611 GO:0005515
Bva12g00580 633 Gene3D Ribonuclease Inhibitor 45 212 IPR032675 -
Bva12g00580 633 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 230 - -
Bva12g00580 633 SUPERFAMILY L domain-like 51 393 - -
Bva12g00580 633 Gene3D Ribonuclease Inhibitor 213 577 IPR032675 -
Bva12g00580 633 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 311 393 IPR044974 GO:0006952
Bva12g00580 633 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 311 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00580 Bva-Chr12 7657507 7660388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00580 127 271 WRKY Transcription Factor Family AT4G12020 29.412 8.08e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00580 - - gmx:100799850 398.667