Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00576 ATGGCTGAAACTTCAAGAATCCTATACACTACTCTTACTCCTAGTTTCAGTCAAACCCAGAGAACTCATGTGGGTCAGCGTCAACTTAGTTTCTCACGCAGGCACCAAGTTCATTGTTCAGTTTCCGCCGGTGGTGCCACCAGAACTGCTGCTACTGAATCTATACCATGGGGCTGTGAGATTGATTCTTTAGAAAATGCTTCTGCTTTGCAGAAATGGTTATCAGACTCAGGGCTCCCACCCCAGAAGATGGCCATAGAAAAAGTGAATGTAGGAGAGAGAGGTCTTGTTGCATTGAAGAATATAAGGAAGGGAGAGAAATTGCTCTTTGTGCCTCCCTCGTTAGTCATCACTGCAGATGCCGAGTGGAGCAGCCCAGAAGCTGGTGAGATATTGAAAAGGAATTCAGTGCCGGATTGGCCATTGATTGCAACTTACCTCATTAGTGAAGCTAGTCTCATGAAATCTTCAAGATGGAACAATTATATATCAGCTTTACCTAGGCAGCCCTATTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGATATTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAACACCCCAGTTTATTCCCTGAAGAGGTGTTCAACATAGAGACCTTCAAATGGTCATTTGGCATTCTTTTCTCTCGCTTGGTTCGCTTACCCTCGATGGATGGAAAGGTTGCTTTGGTTCCATGGGCAGATATGCTGAATCATAGTTGTGACGTGGAAGCGTTTTTGGATTATGACAAATCATCAAAGGGAATTGTGTTTACTACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTCATCTCATATGGCAAGAAATCTAATGGAGAGCTTCTGCTATCTTATGGGTTTGTTCCAAAGGAAGGTACCAATCCTAGTGATTCAGTCGAGTTACCACTGTCTCTTAAAAAATCTGACAAGTGCTATGCGGAGAAGTTGGAACTCTTGAAAAAGCACGGATTGTCAGTATCCCAGTGCTACCCTATGCAAGTGACTGGATGGCCATTGGAACTAATGGCGTACGCTTACTTAGCTGTAAGCCCTCCAAGCATGAGAGGGAAATTTGAAGAGATGGCTGCTGCAGCATCAAATAAAACAACGGCGAAGAAGGATTTGAGATATCCAGAAATAGAGGAGCAAGCTTTGCAATTCATACTAGATAGCTGTGAAGCCAGCATATCAAAGTATAACAAGTTCTTACAGGTAAGTGGATCACTAGATTTGGATGTGACTTCTCCAAAGCAACTCAACCGAAGACTCTTTCTGAAGCAACTAGCTGTGGACTTGTGCAATAGTGAGCGAAGAATATTGTTTCGTGCTCAATACATACTGAGGAGGAGACTGAGGGATATGAGGACTGGTGAATTAAGAGCTCTGAGAATCTTTGATGGTTTCAGGAATCTTTTCCAATG 1493 0.4287 MAETSRILYTTLTPSFSQTQRTHVGQRQLSFSRRHQVHCSVSAGGATRTAATESIPWGCEIDSLENASALQKWLSDSGLPPQKMAIEKVNVGERGLVALKNIRKGEKLLFVPPSLVITADAEWSSPEAGEILKRNSVPDWPLIATYLISEASLMKSSRWNNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKHPSLFPEEVFNIETFKWSFGILFSRLVRLPSMDGKVALVPWADMLNHSCDVEAFLDYDKSSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELPLSLKKSDKCYAEKLELLKKHGLSVSQCYPMQVTGWPLELMAYAYLAVSPPSMRGKFEEMAAAASNKTTAKKDLRYPEIEEQALQFILDSCEASISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRRLRDMRTGELRALRIFDGFRNLFQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00576 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 18 292 - -
Bva12g00576 497 SUPERFAMILY SET domain 66 315 IPR046341 -
Bva12g00576 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 328 494 IPR036464 -
Bva12g00576 497 ProSiteProfiles SET domain profile. 82 298 IPR001214 GO:0005515
Bva12g00576 497 CDD SET_RBCMT 81 312 IPR044431 GO:0016279|GO:0018022
Bva12g00576 497 SMART set_7 82 304 IPR001214 GO:0005515
Bva12g00576 497 Gene3D - 317 487 IPR036464 -
Bva12g00576 497 Gene3D set domain protein methyltransferase, domain 1 34 311 - -
Bva12g00576 497 PIRSF RMT_SET 1 494 IPR011192 GO:0009507|GO:0030785
Bva12g00576 497 Pfam Rubisco LSMT substrate-binding 331 464 IPR015353 -
Bva12g00576 497 PANTHER - 18 292 - -
Bva12g00576 497 Pfam SET domain 94 298 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00576 Bva-Chr12 7634618 7639906 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva12g00576 SET 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00576 - - gmx:100803319 847.81