Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00573 ATGGGTTCCAGAAAGGGCGACAACCCTCACTCCGGCGACGGCGCCAGCCCTGGGAAAATCTTCATTGGAGGATTAGCTAAAGATACAACCTCGGATACATTTGTCAAGTACTTCGAGAAGTACGGAGAGATAACAGACTCGGTGATAATGAAAGATCGGCACACGGGTCGACCACGGGGCTTCGGGTTCATTACCTATTCGGATCCTTCTGTTGTTGACCAAGTTATTCAGGAGGACCATGTGATCAATGGCAAGCAGGTTGAGATCAAAAGGACCATTCCGAAGGGTGCAGCACTAGCTAATGATtttaaaaccaagaaaatttttgttggtGGCATTCCAACCACAGTAACTGAAGATGAATTCAGGGGCTTCTTCTCAAAGTATGGCAAGGTTGTGGAACACGAGATCATTCGCGACCACACTACAAAGCGTTCTCGGGGCTTCGGATTTATTGTGTTTGACAGTGAAAAGGTTGTTGATGATTTGTTGTCAAATGGAAATATGATTGATATGGCCGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCAGCACCTCTTCCTCCATTTGGTAGTGACTCTAGGGCTCGTCCATACAGTGATGGTTATGTTGGATTTGGCGATTCTTATAGCAGTTTTGGCAGTGGCGGTTTTGGTCCTGCTTCTTATAGGTCACTTGGTGGTTTTGGTGGTAGGCTTGGTGATTATGGTGGGTATGGAAGTGGAGATGACTTTAGTGGTAGTTTTGGTGGGTATCCTGGTGGTGGTTTTGCTGGCTACCGAGGAGAGTCATCTTTTGGATATTCTAGTCGCTATGGTTCCTATATGGGGGGCCTTGGTGGTGGATATGGTGGGAGTGGGTTAGGTGGATATGGCCGTGGTGGTGGGGGCTATGGAAGCTATGATGGTCCAGGCTCTGGTGGGGGTTATGATTCCGCCCCCGGTGCTGGTTATGGTGGTGGTGCTGGAGGACTATATGGTAGTAGGGGAAGTTATGGTGGTAGTCGTTACCATCCTTATGCAAGATA 1046 0.4732 MGSRKGDNPHSGDGASPGKIFIGGLAKDTTSDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYSDPSVVDQVIQEDHVINGKQVEIKRTIPKGAALANDFKTKKIFVGGIPTTVTEDEFRGFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDDLLSNGNMIDMAGTQVEIKKAEPKKASNPAPLPPFGSDSRARPYSDGYVGFGDSYSSFGSGGFGPASYRSLGGFGGRLGDYGGYGSGDDFSGSFGGYPGGGFAGYRGESSFGYSSRYGSYMGGLGGGYGGSGLGGYGRGGGGYGSYDGPGSGGGYDSAPGAGYGGGAGGLYGSRGSYGGSRYHPYAR 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00573 348 Gene3D - 18 97 IPR012677 -
Bva12g00573 348 SUPERFAMILY RNA-binding domain, RBD 10 96 IPR035979 GO:0003676
Bva12g00573 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Bva12g00573 348 SUPERFAMILY RNA-binding domain, RBD 104 208 IPR035979 GO:0003676
Bva12g00573 348 SMART rrm1_1 19 90 IPR000504 GO:0003723
Bva12g00573 348 SMART rrm1_1 107 180 IPR000504 GO:0003723
Bva12g00573 348 PANTHER OS08G0320100 PROTEIN 1 348 - -
Bva12g00573 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Bva12g00573 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 348 - -
Bva12g00573 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Bva12g00573 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 80 IPR000504 GO:0003723
Bva12g00573 348 Gene3D - 106 189 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00573 Bva-Chr12 7620050 7623123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00573 4 170 Eukaryotic Initiation Factors Gene Family AT2G23350 24.211 1.63e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00573 K12741 - gmx:100801373 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00573 12 7620050 7623123 Bva12g03174 12 22698425 22703747 BWGD