Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00572 atgggAGAGGGAGTGGATAGCGTAAAGGCAGAAGAGGAACGAGTTCAAGAGCATGAAGAAACCGAGACATGGAACCAGAAAAAACAAACCCAAATCCTTCAATTGTCGGAGAAGCTCATCAATGGCGACCTTCAATCCAAAATAGAAGCTGCCAAACAAATCAGAAAGCTCGTTCGGAAGTCTTCAGCTAAAACCCGCTCGAAATTCGCATCTGCTGGGGTCATTCAACCccttattttcatgctttctTCCTTCAACCTCCAAGCCCGAGAAGCTGCTCTACTCGCGCTCCTCAATCTCGCTGTACGCAACGAACGAAACAAGGTCAAAATAGTGACGGCAGGTGCTGTTCCTCCTCTTGTGGAGCTCCTCAAGATGCAAAATAGCAGTATCCCCGAATTAGCTACTGCCGCAATCTTGACGCTTTCTGCTGCTCCACCAAACAAACCCACTATTGTGGCTTCTGGAGCTGCACCACTTCTTATCCGGATCCTTAACTCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAGCCCTCCATAATCTTTCCACTAGCACTGAGAAATTCTCTGAACTTCTCGATGCTAGGGCAGTTACTCCTCTTATCAACCTCCTTAAAGAGTGCAAGAAGTACTCCAAATTTGCTGAAAAAGCTACAGCACTGCTTGAAATCCTTTCCAACTCTGAAGAGGGACGAATTGCAATCACAAATGCAGACGGTGGAATTTTAACCTTGGTAGAGACAGTAGAAGATGGATCACTAGTCAGCACGGAGCACGCTGTTGGAGCTTTGCTATCATTATGTCTTAGCTGCAGAGATAAATACAGGGAACTGATTCTTCAAGAAGGGGCAATCCCAGGCCTTTTGCGGCTGACAGTGGAAGGAACAGCTGAAGCTCAGGATAGAGCCCGCATGCTTCTAGATTTGCTCCGAGATTCGCCGCCAGAAAAAAGACTAGCCTCCACTGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGAGTGGATGGAGCAGATAAAGCTGCTGAAACTGCCAAGCGGTTATGGCAAGATATGGTTCAAAGAAGCATGGAACACAGCATGAACTGCATCCAGCACAGGGCTGCATCTTGTACGCCATCTGAGATTTCATCAACTTG 1142 0.458 MGEGVDSVKAEEERVQEHEETETWNQKKQTQILQLSEKLINGDLQSKIEAAKQIRKLVRKSSAKTRSKFASAGVIQPLIFMLSSFNLQAREAALLALLNLAVRNERNKVKIVTAGAVPPLVELLKMQNSSIPELATAAILTLSAAPPNKPTIVASGAAPLLIRILNSGSVQGKVDAVTALHNLSTSTEKFSELLDARAVTPLINLLKECKKYSKFAEKATALLEILSNSEEGRIAITNADGGILTLVETVEDGSLVSTEHAVGALLSLCLSCRDKYRELILQEGAIPGLLRLTVEGTAEAQDRARMLLDLLRDSPPEKRLASTVLEKIVYDIAERVDGADKAAETAKRLWQDMVQRSMEHSMNCIQHRAASCTPSEISST 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00572 380 Gene3D - 21 217 IPR011989 -
Bva12g00572 380 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 241 IPR000225 GO:0005515
Bva12g00572 380 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 73 115 IPR000225 GO:0005515
Bva12g00572 380 SMART arm_5 229 270 IPR000225 GO:0005515
Bva12g00572 380 SMART arm_5 186 228 IPR000225 GO:0005515
Bva12g00572 380 SMART arm_5 62 102 IPR000225 GO:0005515
Bva12g00572 380 SMART arm_5 145 185 IPR000225 GO:0005515
Bva12g00572 380 SMART arm_5 103 144 IPR000225 GO:0005515
Bva12g00572 380 MobiDBLite consensus disorder prediction 1 25 - -
Bva12g00572 380 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 345 - -
Bva12g00572 380 PANTHER U BOX DOMAIN-CONTAINING 14 345 - -
Bva12g00572 380 SUPERFAMILY ARM repeat 35 322 IPR016024 -
Bva12g00572 380 Pfam Armadillo/beta-catenin-like repeat 104 139 IPR000225 GO:0005515
Bva12g00572 380 Pfam Armadillo/beta-catenin-like repeat 146 184 IPR000225 GO:0005515
Bva12g00572 380 Gene3D - 218 333 IPR011989 -
Bva12g00572 380 MobiDBLite consensus disorder prediction 1 27 - -
Bva12g00572 380 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 157 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00572 Bva-Chr12 7614684 7619496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00572 30 313 U-box Gene Family AT3G54790 38.947 1.43e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00572 K08332 - qsu:112003922 545.043