Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00569 ATGGGCCTCTCAAGTCTGCCATCACCATCAGAAGGTGTATTGTGTGTGCTTCTAGTGAACACTGCCTCATCAATCTCCATAGTCAAAGGCATTGTTAGAACAATCCTTCACATAGTTGGTATCCgtctttcatcatcatcaacatcTTCTGCTTTACCAGATTCCCAAAACCCACCCGAACCCTTTCAGTTCCATCTTTTTCCCTTTGAGGGTTACATTGAGGAGTTCAAAAGCAGGACACCAACGCTTCGTTTTGACTCCGTGTGCCGCTACAAAAGATCTGAACATGACTGTTCTGTTTGCTTGACTCAATTCGAACCAGAATCGGAGATAAACCGCTTGTCATGTGGCCATCTCTTCCATAAAGTGTGCTTGGAGAAGTGGTTGGAGTATTGGAACATCACATGCCCTCTTTGCAGGGCTCCATTGATGCCTGAGGAAGATCCATGTTGCTTTTGGTA 461 0.4338 MGLSSLPSPSEGVLCVLLVNTASSISIVKGIVRTILHIVGIRLSSSSTSSALPDSQNPPEPFQFHLFPFEGYIEEFKSRTPTLRFDSVCRYKRSEHDCSVCLTQFEPESEINRLSCGHLFHKVCLEKWLEYWNITCPLCRAPLMPEEDPCCFW 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00569 153 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Bva12g00569 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 153 - -
Bva12g00569 153 Pfam Ring finger domain 97 140 IPR001841 -
Bva12g00569 153 SUPERFAMILY RING/U-box 93 145 - -
Bva12g00569 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 145 IPR013083 -
Bva12g00569 153 PANTHER - 1 153 IPR044249 -
Bva12g00569 153 SMART ring_2 98 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00569 Bva-Chr12 7592896 7594361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00569 1 147 C3H Transcription Factor Family AT2G04240 61.039 1.52e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00569 K16285 - gmx:100305532 256.529