Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00567 ATGGGTTATATATGTGATTTTTGTGGAGATCAGAGGTCCATGGTGTACTGCCGTTCTGATGCTGCGTGCTTATGTTTGTCATGTGATCGACATGTTCATTCTGCTAACGCCCTCTCTAGGCGTCATTCAAGAACCCTTCTATGTGAGAGATGCAATTCACAACCTGCAATGGTAAGGTGTGCTGAAGagaaaatttctctttgtCAGAACTGTGATTGGTTGGGTCATGGTAACTCTACTTCATCTTCAACACATAAGAGGCAAACAATTAGCTGCTACTCTGGCTGTCCCTCTGCTGCTGAACTTTCTTCAATATGGTCGTTTATCTTAGATATCCCTTCCATTGGTCAATCTACATGTGAGCAGGAACTAGGTTTGATGAGCATCAATGAGAACAGCACTAGTAGTACTTTGGTTTCTCCAGAAAGCCAGACTGCATCTGGTTCAGCTCCAGTAACTGGTATATCCAGCATGGATAAATCTTTGGTTGAAGCTTCTTCAATGCCCGAATCGAGCTTGGAACTGCATATTCTGGACCAGCCAGCTGGACTTGCCAGTGAAACTATGCCCAAGGTATATTGTCCCGGTACAAGAGGTCTTGGATTTTGCGACGACGAGGATAGCCTGTATGATGATTTCAACATGGATGAAGTTGATCTGGATCTTGAGAACTATGAGGAACTTTTTGGTATGGCCCTCAGCCACTCTGAAGAGCTCTTTGAGAATGGCGGAATTGATAGCTTGTTTGGTACAAAGGACCTGTCCGCCGGTGATTCCAATTGTCAGGGTGCTGTTACAGCTGAGGGGTCGTCAGCAGGGCTGGTCAATGCCATGCAACCAGCTTGCAGCAATGCAGCATCTGCTGATTCCATGTTGAGTACTAAAACAGAACCGATTGTCTGTTTCACGGCAAAGCAAGGTCAGTCTAACCTTTCATTTTCTGGCATTACCGGAGAGAGTGTAGATTATCAAGACTGTGGGGCTTCTTCAATGCTTCTCATGGGAGAACCACCGTGGTGTTCTCCTTGCCCGGAGACTTGTATACAATCTGCCAACCGCAACAACGCCGTCATGcgttataaagaaaagaagaagactcGCAAGTTTGATAAAAGAGTGAGATACGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGGGTGAAGGGCCGGTTTGTGAAAGCCGGCGAGGCCTATGATTATGACCCTCTGAGCCCAACCAGAAGCTACTG 1232 0.4545 MGYICDFCGDQRSMVYCRSDAACLCLSCDRHVHSANALSRRHSRTLLCERCNSQPAMVRCAEEKISLCQNCDWLGHGNSTSSSTHKRQTISCYSGCPSAAELSSIWSFILDIPSIGQSTCEQELGLMSINENSTSSTLVSPESQTASGSAPVTGISSMDKSLVEASSMPESSLELHILDQPAGLASETMPKVYCPGTRGLGFCDDEDSLYDDFNMDEVDLDLENYEELFGMALSHSEELFENGGIDSLFGTKDLSAGDSNCQGAVTAEGSSAGLVNAMQPACSNAASADSMLSTKTEPIVCFTAKQGQSNLSFSGITGESVDYQDCGASSMLLMGEPPWCSPCPETCIQSANRNNAVMRYKEKKKTRKFDKRVRYASRKARADVRKRVKGRFVKAGEAYDYDPLSPTRSY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00567 410 CDD Bbox1_BBX-like 4 47 - -
Bva12g00567 410 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bva12g00567 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 410 - -
Bva12g00567 410 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Bva12g00567 410 CDD Bbox1_BBX-like 47 90 - -
Bva12g00567 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 410 - -
Bva12g00567 410 MobiDBLite consensus disorder prediction 134 153 - -
Bva12g00567 410 Pfam CCT motif 353 395 IPR010402 GO:0005515
Bva12g00567 410 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Bva12g00567 410 SMART bboxneu5 48 90 IPR000315 GO:0008270
Bva12g00567 410 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00567 Bva-Chr12 7578095 7582047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00567 1 410 C2C2-CO-like Transcription Factor Family AT3G07650 57.176 4.91e-158 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Bva12g00567 CCT 9.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00567 - - gmx:100796748 654.825