LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g00558	ATGTTTCTGGCGAATGCCAAACCTTCTCTTTCCTTGTCCGTTTCACCGTGTCTCCTGAACGGCAAATTGCAAACAGCGATGAGAAGTAAGAGTGTCCGTCGACTCAGCTCCGTGAATCGTCCTCTGAAGACTGCCAACGCCACCGCCGCTGTCAGAAGGTGTCCTCCCATCGTGGGTCACAGTGAGgaTGTAAATGATGCTGCTGTGCCTGAGACATATAGTGACAGTGATGATGACCCAGAAGATGGTAGAATGGCAGGTTCAACTGACAATATGACTGATTGCATGAAAGAGCACTCCAATGGAAGTCCTGTTGGGATTTCAAGTCATGACTATTTatgtatagatattttggaCAGAAAGATTTGCTTGGCATGCAATGAAGGTGGGGATGTATTAATTTGTAGTGAAATAGGTTGCCCTGTTAGTCTTCATTCAAAGTGTATCCGCAGTAAACCTTCTTTTGACAATATGGGGAATTTCTATTGTCCTTACTGCAAGTACAAAAGGGCAGTGGCAAAAGTTCAAGAATTGAAGAACAAGGTattgattgagaaaaaagatttgtcaaaatttttggGTAAAAATGTGGGTAGTGGTGATAAAGCGGTGCAGAAAAATGAGACTGTTAAGAGAACAGAGCACCATGAGGTACCCCATACAGGAGTTGAGGATTTCTTAGATGGTTGTAATGGGAAGAGCAGTAATGATGTTCAAAGTCAACCTTTGCGGACAAAGGGAgatcaagaaagagaaaggactGAAATAGAGTATCCAAGACATAATGATGAGGGTTTGCATGAAATATGTCTTGAGAatagagaggaagaagaggccTTGAATGCTTCCCCTTTGAGAATGTTGAGGTTGAAAGATATAGAACATGATGACAAGGATTTGCATGAAACAAGTCGTGTGACCATAGAGGAAGAAGAGCCATTGAATGCTTCCCCTTTGGGAGTGTTGAGGATGAAAGGTATAAAAGAGATACTCCAGAAGGAACCAAGGGTGCCTCCAACAGATCGTTCTATCAGTGAAACTATTagttcatattcatatttgggagatttctcattaaaaaaaggcTGTTTAAGAAATGGGGCAAATAGGACAGCATATCCTCAGATGGTTGATTCCAACAGGGAATCACcccataaaagtaaaatttcagGGACAAATGCACGTTTCCAAAATCTGGAAGCTACCCAGTCCAGAAGATTACCACAGGGATTTGCTAACACTAGAGCGACACATGCAAAGCGTAGGAGAGTACTTTGGACgactgaagaagaaaatatgctGAAGGAAGGAGTGTCAAGATTCTcaacagaaaatcaaaatgtcCCTTGGAGGAAAATCTTGGAATATGGCAGTAATGTGTTTGACTCAACTCGTACTCCAGTTGATCTGAAGGATAAATGGAGGAATATGGTTGCCAAGGGAGGAAGGAGCTA	1454	0.3755	MFLANAKPSLSLSVSPCLLNGKLQTAMRSKSVRRLSSVNRPLKTANATAAVRRCPPIVGHSEDVNDAAVPETYSDSDDDPEDGRMAGSTDNMTDCMKEHSNGSPVGISSHDYLCIDILDRKICLACNEGGDVLICSEIGCPVSLHSKCIRSKPSFDNMGNFYCPYCKYKRAVAKVQELKNKVLIEKKDLSKFLGKNVGSGDKAVQKNETVKRTEHHEVPHTGVEDFLDGCNGKSSNDVQSQPLRTKGDQERERTEIEYPRHNDEGLHEICLENREEEEALNASPLRMLRLKDIEHDDKDLHETSRVTIEEEEPLNASPLGVLRMKGIKEILQKEPRVPPTDRSISETISSYSYLGDFSLKKGCLRNGANRTAYPQMVDSNRESPHKSKISGTNARFQNLEATQSRRLPQGFANTRATHAKRRRVLWTTEEENMLKEGVSRFSTENQNVPWRKILEYGSNVFDSTRTPVDLKDKWRNMVAKGGRS	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g00558	484	Gene3D	-	426	484	-	-
	Bva12g00558	484	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	86	304	-	-
	Bva12g00558	484	CDD	SANT_TRF	426	478	-	-
	Bva12g00558	484	MobiDBLite	consensus disorder prediction	229	252	-	-
	Bva12g00558	484	SUPERFAMILY	Homeodomain-like	421	478	IPR009057	-
	Bva12g00558	484	SMART	PHD_3	122	167	IPR001965	-
	Bva12g00558	484	SMART	sant	422	480	IPR001005	-
	Bva12g00558	484	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	118	189	IPR013083	-
	Bva12g00558	484	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	372	482	-	-
	Bva12g00558	484	MobiDBLite	consensus disorder prediction	58	87	-	-
	Bva12g00558	484	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	372	482	-	-
	Bva12g00558	484	ProSiteProfiles	Zinc finger PHD-type profile.	120	169	IPR019787	-
	Bva12g00558	484	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	418	482	IPR017930	-
	Bva12g00558	484	ProSiteProfiles	Myb-like domain profile.	418	478	IPR001005	-
	Bva12g00558	484	Pfam	Myb-like DNA-binding domain	425	477	IPR001005	-
	Bva12g00558	484	ProSitePatterns	Zinc finger PHD-type signature.	123	166	IPR019786	-
	Bva12g00558	484	SUPERFAMILY	FYVE/PHD zinc finger	119	175	IPR011011	-
	Bva12g00558	484	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	86	304	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g00558	Bva-Chr12	7492909	7497265	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Bva12g00558		Myb_DNA-binding	4e-07	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g00558	-		-	lang:109325681	243.432