Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00557 ATGGGATCCTTCAATGGAATATCTATGTTACAACTTGAAGACAAGGATTTACTCATGAGTCCTTCCGCACCaatttccaaaagaaagaTCCCCTTTGAGGAGGATTCTCAAATTGGTGACTTAGGAAAGTTTAGTCTTCACAATGTTAAGAGCAAGATGAGAAGCAGCATAAGAGTAGTAATTCTTTCTGCCAAGATAAGTTTGCTCATGCCCTTTGGTCCCATGGCAATTTTGGCTGATAAATTGTTTGATAGTCATggtttggtctttctctttAGCTTATTGGGCATATTACCTTTGGCTGAGCGTTTAGGTTATACAACAGAGCAATTGTCTTGCTTTACTGGACCTACTGTGGGAGGTCTTTTAAGTGCAACATTTGGAAATGCAACAGAATTGATTATATCAATTCGTGCCCTAAAAACTGGAATGGTTCGTGTTGTTCAACAATCATTGCTAGGGTCCATTTTATCAAACCTATTGCTTGTTCTTGGATGTGCATTCTTTGCAGGAGGAATTGTGATTAAGAGAGAACAGTCATTTAACAACGCAGATGCTAGTGTAGACTTTGGATTACTTTTAATGGCAGTAATGGGTCTGTTATTTCCAGCAGTTCTCCATTCAACAGAGACAGAATTAGAGTATGGGGAATCTCAACTATCTCTTTCAAGATTCACTAGTTGTATTATGCTTATGGGATATGGCTCCTATATAGTTTTTCAATTGAAGAGGCAGAATAATTTAAGAGCTTCAACTGATGAGGAAAAGGGTCTAAATGAAGAGAGCTTAGATGATGTAGAAGCTCCTGAGATTTCTATGCGGGAGTCAATAATATGGCTGTTTATTTTGACAGCATGGATATCCATACTTTCAGATTACCTGGTTAACACCATAGAGgGAGCATCAAGGGAGTCAAAAATGCCTATAGCATTTATTAGTGTTATTCTTCTCCCTGTAGTAGGGAATGCAGCAGAACATGCTGGAGCTGTTATGTTTGCTGTCAAAGACAAGCTTGACATATCACTTGGGGTAGCTGTTGGCTCTTCAATTCAAATATCAATGTTTGTGATTCCTTTATGTGTGGTTGTGGGCTGGAAGATTGGGTGCCCTATGAACTTAAACTTTGAGCTTTTTGAGACTTGTTCACTCTTCATGACTGTTATTCTAGTTGCTTTCTTGTTGCATAATGGGACTTCAAATTGCTTAAAAGGATTAATGCTCATTTTTTGCTATATGATTGTGGCCGCAAGCTTCTTTCTACATGATGACTATATTTTAATAGaaaatta 1289 0.3693 MGSFNGISMLQLEDKDLLMSPSAPISKRKIPFEEDSQIGDLGKFSLHNVKSKMRSSIRVVILSAKISLLMPFGPMAILADKLFDSHGLVFLFSLLGILPLAERLGYTTEQLSCFTGPTVGGLLSATFGNATELIISIRALKTGMVRVVQQSLLGSILSNLLLVLGCAFFAGGIVIKREQSFNNADASVDFGLLLMAVMGLLFPAVLHSTETELEYGESQLSLSRFTSCIMLMGYGSYIVFQLKRQNNLRASTDEEKGLNEESLDDVEAPEISMRESIIWLFILTAWISILSDYLVNTIEGASRESKMPIAFISVILLPVVGNAAEHAGAVMFAVKDKLDISLGVAVGSSIQISMFVIPLCVVVGWKIGCPMNLNFELFETCSLFMTVILVAFLLHNGTSNCLKGLMLIFCYMIVAASFFLHDDYILIEN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00557 429 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 6 427 IPR004713 GO:0006812|GO:0008324|GO:0016021
Bva12g00557 429 Gene3D - 117 420 IPR044880 -
Bva12g00557 429 TIGRFAM caca2: calcium/proton exchanger 53 419 - -
Bva12g00557 429 Pfam Sodium/calcium exchanger protein 277 416 IPR004837 GO:0016021|GO:0055085
Bva12g00557 429 Pfam Sodium/calcium exchanger protein 88 242 IPR004837 GO:0016021|GO:0055085
Bva12g00557 429 PANTHER VACUOLAR CATION/PROTON EXCHANGER 6 427 - -
Bva12g00557 429 TIGRFAM cax: calcium/proton exchanger 70 419 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00557 Bva-Chr12 7484342 7491855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00557 1 423 Antiporters AT1G55730 61.321 3.35e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00557 K07300 - jre:109000743 536.954